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Genome Sequence of Polycyclovorans algicola Strain TG408, an Obligate Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… from afar, without ever hearing much about the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing …
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Gut Fungi: Unexpected Source of Novel Chemicals
… a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory. More recently, O’Malley’s team has begun to … project was supported by a grant from Santa Barbara Cottage Hospital and the University of California, Santa …
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Access to Rock Star Scientists
… to pursue a STEM career, specifically in a government lab. My favorite thing is the mentorship provided by JGI. … a STEM career. I can see myself working at a national laboratory. My favorite things about working here have been …
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Virus-Microbe Interactions of Mud Island Mangroves
… this year, Ian Rambo, a graduate student in Brett Baker’s lab at the University of Texas at Austin, will defend his … part of their thesis research at one of the DOE national laboratories or national user facilities. Baker had worked … my career path,” he said. “I much preferred the National Lab to academia, and saw great potential in the academic and …
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Better Living Through Bioenergy
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DOE Metrics
… % Goal FY 2025 Total 700.0     8,585     Q1 2025 175 190.304 109% 2,164 2,136 98.7% Q2 2025 175 152.100 87% 2,117 2,112 … **Operating Hours target is based on 98% of the total available hours.   FY 2024 DOE Metrics There were 2,456 unique* … new computational developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… team, which included scientists from Oak Ridge National Laboratory and the U.S. Department of Energy (DOE) Joint … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory. The JGI sequenced the shrub … some songbird W chromosomes — suggest that they are advantageous enough to have evolved multiple times independently. …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… the University of Wisconsin, Madison. And Trina McMahon's lab has been sampling the microbes of that lake for over 20 … So a few years ago, when they set out to analyze 500 metagenomes, it was the biggest project the JGI had ever put … In this episode: the software evolution that made metagenome assemblies like this possible. …
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Gotta Catch 'Em Gall
Kasey Markel and Patrick Shih (UC Berkeley and the Joint BioEnergy Institute) are looking for …
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Annual Genomics of Energy & Environment Meeting
Thank you for joining us at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of Energy … Cotrufo, Colorado State University N. Louise Glass, UC Berkeley Ian Foster, Argonne National Laboratory Sue Rhee, Michigan State University   …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this … with the assembler program MetaHipMer2. Oak Ridge National Lab is home to two supercomputers — Summit and Frontier — …
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