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From Competition to Cooperation
Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The Science By comparing 135 fungal sequenced … for which there were previously no genomes of symbiotic species available: 73 saprotrophs and 62 mycorrhizal …
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Exploring Polymorphisms Created by Transposable Elements
My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that transposable elements (TEs) contributed to in the grass model species Brachypodium hybridum . …
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Natural Prodcast Episode 3: The Primer, Part 3
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about … millions of years to find the precursor sequences. Those species are long dead. And if the DNA sequences have been …
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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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Characterizing Communities: JGI Announces Latest CSP Portfolio
Science Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, 24 … provide more information on these ecologically relevant species. Another focus area was inter-organismal …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to … Fungal Genomes Project, including 55 newly-sequenced species.  The Impact The class  Dothideomycetes includes … The data allowed the team to reclassify 25  Dothideomycetes species, and also provides more information about speciation …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
In honor of the JGI's 25th anniversary in 2022, we have … Lawrence Berkeley National Laboratory researchers were studying Chromosome 5, which contains about 6% of the human … cancer. Lawrence Livermore National Laboratory had teams studying Chromosome 19, which contains about 2% of the human …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Igor Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … on Olpidium was from agricultural research. Several species of Olpidium are obligate endoparasites of some … samples turned out to be a mixture of genetic material with various origins, ranging from fungi, plants to bacteria. …
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Green Algae Reveal One mRNA Encodes Many Proteins
Gene expression in eukaryotes was long held to be monocistronic – that is, a single gene makes messenger RNA, which encodes a single … genes are encoded on a single molecule of mRNA – in two species of green algae, Chlamydomonas reinhardtii and …
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Evolution of a Fungal Gene Expression Regulator
Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or G in a genome … the fungal tree of life to date, involving more than 500 species of fungi. The Impact Interactions between plants and …
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JGI Announces 2025 New Investigator Portfolio
Ian Gilman, Louis Graf, Yuxi Guo, Shaomei He, Vayu Hill- Maini, Forrest Lefler, Pok Man (Bob) Leung and Huang Li; … and Mar Schmidt; [bottom] Cody Spiegel, James Tan, Emma Timmins-Schiffman, Andressa M. Venturini, Valentin Waschulin, … review. You can also find more information about the JGI’s  various proposal calls here. …
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A Plantiful Future: Xiaohan Yang
Can plants help humans attain a renewable energy future? Can they help lock away more … Laboratory, believes they can. And, what’s more, that using gene editing technology to conscientiously mix traits of different plant species will help us get there. …
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