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Supercharging SIP in the Fungal Hyphosphere
… High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi … The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial … isotope to it. The isotopes are incorporated into the DNA of specific microbes who consume the labeled food or …
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Metabolomics
… strengthens -omics technologies at the JGI by identifying the actual molecules present in an environment that … functional genome annotation, improves understanding of the role small molecules play in diverse biological … sheds light on nutrient cycling, and leads to the discovery of new molecules and pathways. The JGI Metabolomics Platform …
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10 From JGI on the 2019 Highly Cited Researchers List
… Clarivate Analytics, formerly the IP & Science arm of Thomson Reuters, has released their 2019 list of Highly Cited Researchers , which includes 10 affiliated with the JGI . The 2019 list focused … subgroup, section Nigri. Aspergillus fungi play important roles in areas ranging from industrial production to …
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Learning to Look
… Machine learning approach significantly expands inovirus … “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … which are filamentous viruses with small, single-stranded DNA genomes and a unique chronic infection cycle. “We’re not …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the … which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … and PPRD could help with understanding gene functional roles, but the experimental inconsistency makes …
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Webinar: MycoCosm Tutorial
… Learn more about JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative … provider who are doing the sampling, strain isolation, RNA/DNA extractions and quantifications, and shipping. A: … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Trent Northen
… is currently a Senior Staff Scientist at Berkeley Lab. Since joining Berkeley Lab in 2008, Dr. Northen has had leadership roles within large DOE-funded research programs using mass … to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the …
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Meeting Code of Conduct
… All participants and staff of JGI events are required to adhere to the following Code of Conduct. Event organizers will enforce this Code …
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Igor Grigoriev
… Dr. Grigoriev joined the JGI in 2003, following his postdoctoral training at … at Lawrence Berkeley National Laboratory, and an Adjunct Professor of Plant and Microbial Biology at University of California, … at the JGI. Click to learn more about the program's areas of focus, major initiatives and more.  …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… analyzing the enzymes present in the complex organic matrix of the forest floor, a team of researchers have found that … So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences … already suspected: these microbial groups play different roles in a healthy, forest soil ecosystem. Bacteria are …
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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked by a … over one “petabase” – a quadrillion nucleotide bases of DNA sequence to the public data repositories over its now …
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Fishing for Novel Cellulose Degraders
… genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is a … those that are in low abundances—and their functional roles in their community. This study shows how the … cellulases from their captured genomes, the team then used DNA synthesis and cloning, followed by protein in vitro …
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