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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science … Shiitake mushrooms get their name from the same place they often source their nutrients — the shii tree, a Japanese … genetic diversity between cultivated and wild shiitake populations. The Impact Lentinula mushrooms are white rot …
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Widespread natural variation of DNA methylation within angiosperms
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… characteristics — creating many different ways of processing nitrogen. To boost crops more efficiently in … has a rich back story — they rely on enzymes that have been evolving for billions of years. However, these enzymes are often loosely …
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Identifying the Microbial Cleanup Crew at a Superfund Site
PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via leakage from a … bioremediate toxic substances has led to the development of cost-effective environmental cleanup strategies. Summary … of Española, the Santa Clara Pueblo and its nearby rural populations rely heavily on groundwater as their only source …
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Fungal Friends or Foes in Plant Roots
… host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … friends or foes. The Impact Microbial communities comprised of fungi and bacteria can thrive in plant roots. They play … consisting of fungal species from natural Arabidopsis populations around Europe. The JGI sequenced and annotated …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … and analysis of their data at the time. Following the publication of their paper in 2011, Dr. Sekimoto from …
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Genomic variation within the maize stiff‐stalk heterotic germplasm pool
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Genomic variation in 3,010 diverse accessions of Asian cultivated rice
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Variation and Inheritance of Small RNAs in Maize Inbreds and F1 Hybrids  
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Training the Next Generation of Talent
DOE JGI, UC Merced Days after presenting the results of his summer research at the U.S. Department of Energy Joint Genome Institute (DOE JGI), a DOE Office of … algorithm for RNA-Seq assembly. RNA-Seq is a technique for profiling the small fraction of a genome that contains …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… for the global research community. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has released … jointgeno.me/2024StrategicPlan .) This plan aligns the DOE Office of Science user facility with broader national … research questions. Stewarding resources theme. Evolving and growing the JGI workforce and culture …
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Plant compartment and genetic variation drive microbiome composition in switchgrass roots
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