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Nigel Mouncey
… Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth Director in its … and new crop traits. Dr. Mouncey has successfully built integrated and highly effective multi-disciplinary teams, … is also on the Leadership Team of the National Microbiome Data Collaborative and served as President of the Society …
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Shotgun metagenomic analysis of microbial communities from the Loxahatchee nature preserve in the Florida Everglades
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A More Intuitive Phytozome Interface
… the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome … website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  … building high performance user interfaces and backend data systems. Trying to maintain v12’s codebase and legacy data …
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Recruiting Human Microbiome Shotgun Data to Site-Specific Reference Genomes
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A k-mer-based approach for phylogenetic classification of taxa in environmental genomic data.
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Natural Prodcast Episode 3: The Primer, Part 3
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … DAN: Well, it is and it isn’t. It depends on different systems of secondary metabolism and the things that are in … probably been since the last decade. We have a lot more data. Obviously, there’s been a lot of sequencing going on, …
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JGI Early Career Researchers Featured in mSystems Special Issue
… In a special issue of mSystems , out May 14, 2019, JGI researchers are among the … article, Micro-Scale Applications head Rex Malmstrom and Metagenome Program head Emiley Eloe-Fadrosh outline more … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational …
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Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last … the JGI is sequencing thousands of bacterial and archaeal genomes from diverse branches of the Tree of Life.  Its … the study of giant viruses.  Kyrpides and the JGI’s IMG/M Data Portal were instrumental to  a study that looked into …
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A Grass Model to Help Improve Giant Miscanthus
… of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass Miscanthus sinensis has been published. Analysis of the genome sequence also provides insights into how the multiple … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… City. Grimwood is also co-director of the HudsonAlpha Genome Sequencing Center. Grimwood heads the Library … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 … and biology of human chromosome 19 The DNA sequence and comparative analysis of human chromosome 5 The sequence and …
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Comparative genomic and physiological analysis provides insights into the role of Acidobacteria in organic carbon utilization in Arctic tundra soils
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