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A Taxonomy of Bacterial Microcompartment Loci Constructed by a Novel Scoring Method
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Metagenomic insights into the taxonomy, function, and dysbiosis of prokaryotic communities in octocorals
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JGI announces final round of 2022 Functional Genomics awardees
Twice each year, the JGI accepts proposals for state-of-the-art functional genomics research from potential users … synthesis and omics capabilities to enhance understanding of gene and genome function.  Below find a list of the final six …
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Learning to Look
… “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … by scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office of Science user facility … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s …
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Evolution of a Fungal Gene Expression Regulator
Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or G in a genome sequence can lead to changes in protein structures … 5mC is an important piece of how they regulate their genomes, but is not well understood in fungi. A team of …
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Axel Visel
Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy for Science … and applied novel computational and experimental sequence-based methods for elucidating the gene regulatory landscape … Computational Biology , Nucleic Acids Research . Over 80 publications in peer-reviewed journals including Nature, …
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How Filamentous Fungi Sense Food
… . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … enriching the work being done as part of the 1000 Fungal Genomes Project. Funding for the project was also provided …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have revisited a … over 27,000 microbial genes. These genes were identified based on their potential to efficiently degrade … coherent pieces called contigs — into genes and even into genomes — from these environmental samples,” said Matthias …
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Tanja Woyke Elected to American Academy of Microbiology
Tanja Woyke , who has been elected to the American Academy of Microbiology (AAM) ! She is among the 68 new Fellows in … from 118 nominees. The selection process for AAM Fellows is based on their records of scientific achievement and … genetic material of uncultivated microbes and link their genomes to the roles they play in the environment. One …
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Ancient Algae Reveal Secrets of Plant Evolution
… 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  Zygnematophyceae , … Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … these algae are considered sisters to land plants, based on shared genetic traits and evolutionary lineage. …
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Overview of the Genomes OnLine Database (GOLD)
TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated …
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