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Virus Discoveries that Keep Getting Bigger
… Sequence-based studies — from metagenomics to single-cell work — have quickly accelerated … This work was conducted by the US Department of Energy Joint Genome Institute, a DOE …
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Fishing for Novel Cellulose Degraders
… A “bait and hook” single-cell genomic approach to bioprospecting. The Science One of … specific catches. A similar technique has been developed by researchers led by Tanja Woyke at the U.S. Department of … The work conducted by the U.S. Department of Energy Joint Genome Institute, a …
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Better Crops With a Pointillist Approach to Plant Genomics
… In this episode, we peer into plant cells. Researchers are using measurements from single cells to understand which genes help plants grow, get …
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Exploring the Structural, Biochemical, and Functional Diversity of Glycoside Hydrolase Family 12 from Penicillium subrubescens
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Danielle Goudeau
… Danielle operates the single-cell genomics pipeline for JGI collaborators. This work combines …
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JGI@25: Using Team Science to Build Communities Around Data
… in 29 U.S. states and 35 countries. (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) … for an encyclopedia of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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Rex Malmstrom
… high throughput approach for isolating individual bacterial cells and amplifying their genetic material, thus bypassing the need to culture these microbes in the lab. … the Microscale Applications group to operate a similar single-cell genomics pipeline that provides JGI users access …
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Four Researchers Join JGI User Executive Committee
… evolution, with a focus on microbiome sciences and fungal symbioses. He has worked closely with both the Fungal & … past decade in gene regulatory network projects supported by the CSP, and as part of microbiome research involving the … His current research focuses on the evolution, ecology, genomics and function of microbes and microbiomes, …
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JGI User Executive Committee Expands
… On the UEC she intends to represent the user community by providing input on JGI policies and capabilities that … Her research focus is genetically engineering the plant cell wall to address dairy sustainability challenges. She’s … marine flowering plants, and their microbiomes. She is exploring the seagrass rhizosphere in her ongoing CSP New …
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Nikos Kyrpides
… microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial … the genome analysis and Bioinformatics core at Integrated Genomics Inc. in Chicago, IL. He did his postdoctoral … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar …
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UC Merced Interns Reflect on Their JGI Summer Projects
… skills as well as build their network in the field of genomics and scientific research. The topics students worked … more about their work here in a series of videos produced by JGI Communications & Outreach intern Ashleigh Papp. The … out the short videos highlighting the exciting work done by the 2020 cohort of JGI-UC Merced interns .   by: Ashleigh …
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Exploring microbial functional biodiversity at the protein family level—From metagenomic sequence reads to annotated protein clusters
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