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Doubling Down on Known Protein Families
… online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach to better understand … boundaries by applying AI methodologies to unravel their roles,” Pavlopoulos said. “Consequently, we have amassed an …
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Igor Grigoriev
… at Lawrence Berkeley National Laboratory, and an Adjunct Professor of Plant and Microbial Biology at University of … Nature Microbiol. 7(9):1419-1430. Ye et al (2022) The role of zinc in the adaptive evolution of polar … … Fungal & Algal Science Program … Education … Selected Publications … Awards and Service …
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Draft genome sequence of Mesonia hippocampi DSM 29568T isolated from the brood pouch of a diseased male seahorse.
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What Happens Underground Influences Global Nutrient Cycles
… for User Science (FICUS) program, two Department of Energy (DOE) Office of Science national user … and biochemical reaction networks, and also assessing the role of viruses in the soil microbiome. Another accepted … temperatures on tropical rainforests, which play a key role in the global carbon cycle. Tfaily’s team is …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist … Roux , who was recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for … to capture and characterize viral diversity, understand the role of viruses in natural ecosystems, and functionally …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
In the summer of 2015, Adam Session was a postdoc working at the DOE Joint … who also holds a joint appointment with the University of California, Berkeley. Nowadays, Session is an Assistant … are available on the JGI plant portal  Phytozome . “The broad applicability of the method is likely the most …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
JGI-led team significantly expands the global diversity of large and giant viruses. While the microbes in a single … Berkeley National Laboratory (Berkeley Lab) uncovered a broad diversity of large and giant viruses that belong to … may in turn impact the host communities and their roles in carbon and other nutrient cycles. “This is the …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
UC Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first … 2016.  She described the microbial diversity patterns of Puerto Nuevo’s coastal waters and sediment with … demographics to ask questions and learn, serving a strong role in my career interests post-Ph.D. in the sciences. “ …
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2024 Progress Report
… for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide … processed 13,700 metabolomics samples With our users, 247 publications were published   … Our primary objective is to … of a unique cyanobacterial protein and understand its role in photosynthesis. In collaboration with Berkeley Lab …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome … which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … and PPRD could help with understanding gene functional roles, but the experimental inconsistency makes …
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NeLLi — Symposium on New Lineages of Life
… 2023 Symposium” delving into the most recent expansions of the Tree of Life and latest discoveries toward the evolution of cellular complexity and microbial symbiosis. Further, the …
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Learning to Look
… “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … glasses, or a cane, but only Waldo will have all of these features. As described July 22, 2019, in  Nature … , a team led by scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office …
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