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Kaushal Sharma, one of five Antioch High School rising juniors who participated in internships at the DOE Joint Genome Institute this summer through the Biotech Partners … program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates …

… techniques) and utilizing these resources to understand genome organization and regulation, abiotic stress … Department of Plant Biology … Scarlett, et. al. 2023 Multiple origins, one evolutionary trajectory: gradual … Visiting Fellowship Australia … Education … Selected Publications … Awards and Service …

Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex … world facilitating the remixing of genes in the next generation of flowering vegetation. In return for their … including collecting and analyzing the honey bee gut metagenome, which was done with the help of the US Department of …

… as the rhizosphere), researchers hope this massive and integrated data set will help identify how different elements of the ecosystem interact and respond to changes in the … were provided by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …

To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha … which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … time course data from two ecotypes of  Panicum hallii and multiple switchgrass ( Panicum virgatum ) experimental data. …

… in Streptomyces coelicolor . The Impact As an integrative genome science user facility, connecting genes to functions … technology simplifies this identification process. Multiple factors mediate transcription, including … assay. The second step consists of RNA sequencing of whole transcriptomes, and the third is determining the …

… the sequence cap? A(nswer): Proposals that are looking at multiple areas or multiple ways to answer questions are … truly exploratory small proposal that might not max out the whole 500 gigabases? Is it better to try to reach that … file.     … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …

… began oxygenating Earth over two billion years ago. A team of researchers set out to Yellowstone National Park to study …

In honor of the JGI's 25th anniversary in 2022, we have revisited a … crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a close relative and model … large polyploid genome, which means most genes are found as multiple copies across the chromosomes. In a follow-up study …

… moss Ceratodon purpureus is a short plant with a complex genome . Now, high-quality reference genome sequences of the male and female plants, each representing a single … are available. The genome assemblies highlight the multiple advances in sequencing technologies applied to the …

A preview of how large-scale single cell genomics complements … mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and that dominant … Microscale Applications group . Cells were randomly sorted, whole genome amplified, then sequenced and assembled. Robert …

… to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … and soon, with trillions. The development of efficient, automated approaches to analyze and classify sequence data …