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Polar Phytoplankton Need Zinc to Cope with the Cold
… other oceans. That zinc turns out to be extremely important for polar phytoplankton.  After peering into the function … collaboration, in 2017, they published the first genome sequence of a cold-adapted microalga: the diatom … his team then linked those species-level observations with data on microalgal communities across different ocean …
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Steven Wilson
… Systems Engineering Group lead.   The group is responsible for developing and supporting applications that span the … project and work order creation and management, automated sequence quality control and automation of microbial/metagenomic assemblies, portals that make data available to the public, and our institutional website. …
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Frederik Schulz
… and eukaryotic microbes and viruses in environmental sequence data. Dr. Schulz employs multi-omics (metagenomics, … discovery pipeline and enrichment metagenomics for terrestrial protists. These approaches enable novel … of Vienna (Austria) PhD Microbial Ecology and Bioinformatics, University of Vienna (Austria) …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… 80 full proposals, resulting from 95 letters of intent. For the first time, 63 percent of the accepted proposals … call recommended including plans to analyze and distribute data through the  DOE Systems Knowledgebase (KBase) , a … to as natural products, the proposal includes plans to sequence several thousand Actinobacteria strains and then …
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Socotra Island the forgotten fragment of Gondwana: Unmasking chameleon lizard history with complete mitochondrial genomic data
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Building Sphagnum Genomic Resources
… Sphagnome data would enable researchers’ insights on their potential … model system focused on carbon cycling studies, rather than for food or fuel applications. The Impact Sphagnum’s impact … (Spruce and Peatland Responses Under Changing Environments) project, assessing how northern peatland ecosystems respond …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… infrastructure – DNA sequencing, synthesis, metabolomics, data analysis, and new technology developments – has … is wild,” and admitting, “friends give me a hard time for that.” But the title brought him back to his first … these amazing technologies that the JGI has to identify and sequence who’s making what, that the context at a microscale …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, …
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Four Researchers Join JGI User Executive Committee
… State University, Jonathan Eisen of the University of California, Davis, and Michael Köpke of Lanzatech are the latest … advanced genomic capabilities, large-scale AI-ready data and expertise to the global research community to study … Program over the past decade in gene regulatory network projects supported by the CSP, and as part of microbiome …
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Expanding Virophage Diversity
… increased the number of known high quality virophage genome sequences 10-fold through computational approaches. By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for Virus)—for the virophage marker gene MCP, they were able …
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Accelerating Metagenomics Discoveries with Deep Learning
… participants in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data gathered … of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural … address some of the most pressing challenges of our time. For more information, please visit  …
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Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data
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