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Webinar: MycoCosm Tutorial
… Learn more about JGI’s  MycoCosm data portal , an interactive collection of … for genome sequencing, or only “true fungi”? A(nswer): Our focus is on fungi, algae, plants, and the microbial … MycoCosm and Fungal Program pages ( https://jgi.doe.gov/our-science/science-programs/fungal-genomics/ ). You can also …
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Introducing New Members of the JGI User Executive Committee
… The JGI welcomes three new members to the JGI User Executive … in giving a voice to JGI users who feel that certain data sharing policies fail to represent the needs of large … for three additional positions on the UEC. Thirty-four JGI users were nominated, representing a breadth of …
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Webinar: PhycoCosm Tutorial
… Learn more about JGI’s  PhycoCosm data portal , an interactive collection of … tools. Questions and Answers 1.  Q(uestion): Why would your Tree ever differ from NCBI Taxonomy? A(nswer): If you … project? A: Combination of: DOE mission relevance Science User community – trying to produce resources for …
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Anuvia taps JGI for expertise to pinpoint products from beneficial soil microbes
… agriculture – such as efficiently using dwindling water resources and restoring and maintaining healthy soils – are at … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… terpene synthase gene family across eucalypt lineages. The Science From the distinct smell of eucalyptus to the flavor … proposal by the DOE’s Joint BioEnergy Institute (JBEI), the JGI worked on resequencing several eucalypt genomes to … between the two species. The work was reported in the journal Heredity . In order to understand the gene expression …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… may have been important in early Earth conditions. The Science Through a combination of sequencing tools and … into the evolution of life on Earth. For decades, longtime JGI collaborator Bill Inskeep of Montana State University … and direct microscopy. Through the JGI’s Community Science Program , the team used metagenome assemblies, …
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A Sorghum Pangenome Opens More Doors to Discovery
… and thousands of resequenced sorghum varieties, a resource for breeders and researchers to harness the traits … Biotechnology Genome Sequencing Center and a member of the JGI Plant Program. Lovell was a senior author on this work … Shakoor, a research scientist at Donald Danforth Plant Science Center.  This work is the result of an international …
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Doubling Down on Known Protein Families
… that single beam. When it comes to microbial communities, scientists have historically been unable to see beyond the … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … diversity has doubled, but in reality it could be three or four or five or tenfold more out there.” Digging Further into …
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Understanding Wildfire Recovery, Starting in Soil
… at the soil microbes present a year after a wildfire. The Science After a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and … and growth.  This study builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful …
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Exploring and Thinking Critically about Scientific Problems with JGI Interns
… While summer interns at the JGI from multiple programs had their own goals to achieve, … with each other on new ways of presenting and researching science. …
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Prepublication data sharing
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Clustering Categorical Data
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