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Open Frameworks Training the Next Generation of Scientists
… provide opportunities for students and professors alike The Science In  PLoS Pathogens , a team of faculty and … to connect educators and empower them to utilize program resources. MICROnet is  built around a community of instructors … for complete processing and analysis of fungal data, the course structures center around the practices of collecting …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… more complete genomic results from single cells. The Science Studying the  genomes of microorganisms is … key to better understanding all the organisms that live in our immediate microbiome. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Yasuo Yoshikuni
… Dr. Yasuo Yoshikuni has been head of the DNA Synthesis Science Program since 2015. The mission of this program is … research focus includes engineering of non-model yeasts for production of biofuels and renewable chemicals, developing … joining the JGI, Dr. Yoshikuni was co-founder and chief science officer at a clean technology startup, Bio …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… terpene synthase gene family across eucalypt lineages. The Science From the distinct smell of eucalyptus to the flavor … of their use in industrial materials, pharmaceutical products, and as biofuel precursors. Collectively, hundreds … between the two species. The work was reported in the journal Heredity . In order to understand the gene expression …
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The JGI Data Portal: Improving User Experience
… around the world, the JGI Genome Portal is a critical resource — it provides access to all of JGI’s genomic databases … more findable and easier to download is a complex one, so our joint team started small, in the tradition of agile design and development,” said Linda Setchell, a Truss product manager who is part of the joint JGI/Truss team. …
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Mapping Heat Resistance in Yeasts
… for improving functional annotation in fungal genomes. The Science In a proof-of-concept study, researchers … range of biotechnological applications, including biofuel production. Efforts such as the 1000 Fungal Genomics Project … of Lawrence Berkeley National Laboratory, aim to improve our understanding of fungal diversity by sequencing genomes …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
… This is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s …
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Cataloging the Microbes that Manage the Health of River Systems
… on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper , researchers describe a … be the first publicly available, river-focused microbial resource that provides information at multiple scales from … in turn affecting environmental and human health, energy production and agriculture. Understanding the compositions …
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New Research Sheds Light on Diversity in the Deep Sea
… deep-sea vents hold vast potential for bioenergy.   The Science Hydrothermal vents are ocean-floor openings in the … new biotechnologies around clean energy,  biofuels and bioproducts.  Summary Hydrothermal vents are typically found … (IMG/M) portal. The study,  published in the  Microbiome journal, broadens our understanding of the unique …
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use oxygen to convert food into … can use to thrive, the process can result in other end products including biofuels and other bioproducts. Summary …
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FICUS-NERSC/KBASE
… is to accelerate scientific discovery at the DOE Office of Science through high performance computing (HPC) and data … and KBase issued a call for proposals in biological data science as part of the FICUS initiative. Proposals submitted …
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A Community Resource for Secondary Metabolite Researchers
… The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to the core set of "primary … shared by most living creatures for energy, growth and reproduction—most organisms produce a set of "secondary … Institute (https:// ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science …
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