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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep … oxygen deep below ground. These archaea fix carbon and nitrogen, but the viruses that infect Altiarchaea cause the … to break through, finally resorting to explosives to succeed. Altiarchaea, like the Hornburg, have a history of …
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JGI on the 2020 Highly Cited Researchers List
Congratulations to the 2020 Highly Cited Researchers at the JGI! They are among those recognized by Clarivate Analytics as “true pioneers in their fields … genomes of Dothideomycetes, the largest class of fungi, by lifestyles. Additionally, as part of an …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … for Ocean Sciences described a novel technique to access high-quality genomic information using minute … minimum zones identified SAR11 bacteria as initiators of nitrogen loss in these waters. The top image on the left …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what … important environmental processes like  carbon fixation , nitrogen cycling and methane production. Meanwhile, … program,  described in Plos Biology , the research team led by scientists at the U.S. Department of Energy Joint Genome …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
Congratulations to the 2023 Highly Cited Researchers from the JGI … of multiple highly cited papers during the last decade” by Clarivate Analytics. This year’s list features 6,849 … Grigoriev’s recent work includes the discovery of anaerobic fungi’s ability to break down lignin , the hardiest of plant …
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New Research Sheds Light on Diversity in the Deep Sea
Microbial communities living near hydrothermal deep-sea vents hold vast … shared a high prevalence of genes involved in sulfur and nitrogen metabolism, as well as those that play a role in … biofuel production and more. … This work was funded by the US-National Science Foundation grants OCE-0728391, …
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An Integrated Dataset to Understand Ecosystem Interaction
Research yields a comprehensive tree and soil dataset for … insights into how these ecosystems cycle nutrients like nitrogen and carbon, as well as improving the tree’s production as a biofuel feedstock. Public accessibility to the data made available through this …
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Genetic and Functional Diversity Help Explain Pathogenic, Weakly Pathogenic, and Commensal Lifestyles in the Genus Xanthomonas
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
Ancient  Chloroflexota s ditched their flagella and other traits when migrating …   focused on a class within  Chloroflexota called  Dehalococcoidia . Some  Dehalococcoidia have a knack for degrading … show the ability to respire with or without oxygen, fix nitrogen, and break down organic and inorganic compounds. …
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JGI Announces 2025 New Investigator Portfolio
… left: [Top] Bill J. Baker, Jeff Barrick, Ian Gilman, Louis Graf, Yuxi Guo, Shaomei He, Vayu Hill- Maini, Forrest … research projects from PIs who have not led any previously accepted proposals.  The New Investigator call , part of our  … including the genomic dynamics of biofuel-producing fungi, the effects of biochar on rhizosphere microbiomes, …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
Proposals aim to sequence and annotate genomes from Antarctica to … bacteria play on mating habits of Mucoromycota fungi, and their effects on these oil-producing species. … meliloti .  S. meliloti is one of the rhizobia, a group of nitrogen-fixing bacteria with symbiotic relationships in …
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where she … samples in support of user science.  Capabilities offered by the platform are a result of Dr. Louie’s establishment of … BP, Olson HM, Purvine SO, Salamov A, et al. Anaerobic gut fungi are an untapped reservoir of natural products. Proc …
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