Results

A 34K SNP genotyping array for Populus trichocarpa: Design, application to the study of natural populations and transferability to other Populus species
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Natural Variation in Lignin and Pectin Biosynthesis-Related Genes in Switchgrass (Panicum virgatum L.) and Association of SNP Variants with Dry Matter Traits
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Altered Expression of Two Small Secreted Proteins (ssp4 and ssp6) Affects the Degradation of a Natural Lignocellulosic Substrate by Pleurotus ostreatus
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Computationally Classifying Fungal Lifestyles
… genomes of Dothideomycetes, the largest class of fungi, by lifestyles. The machine “learned” to identify data … (green). (From Haridas S et al.  Studies in Mycology , 2020.) Using whole genome data from newly sequenced genomes, … The work was also supported by the NSF grants  DEB-1354625 and  IOS-1456958 . Sequencing of  Dothideomycetes …
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Matthew Kellom
… environment, and using metagenomics to study these complex natural systems. Microbial communities living in …
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Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization
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Single Nucleotide Polymorphism Charting of P. patens Reveals Accumulation of Somatic Mutations During in vitro Culture on the Scale of Natural Variation by Selfing
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species … of these varied biomes; the forests share only about 20% of their fungal species. To make useful comparisons, the … Francis Martin will be a keynote speaker at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of Energy …
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Axel Visel
Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the … initiatives at the JGI. Dr. Visel received his Ph.D. in 2004 from the Max Planck Institute in Hanover, Germany, where … Laboratory and as an Adjunct Professor at the School of Natural Sciences at the University of California, Merced. …
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The Power of One, Amplified
… of single cell sequencing to assess the variation within natural microbial populations. Each of the three sequencing … User Facility, is supported under Contract No. DE-AC02-05CH11231. This work was supported in part by a Natural … This work was also sponsored by NSF grants DEB-1441717, OCE-1335810, and OIA-1826734 to RS. …
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JGI@25: Roots of a Mutualist Relationship
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements …       Francis Martin on the main impact of ectomycorrhizal fungi, excerpted from his talk at the 2015 JGI Annual …
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JGI@25: Using Team Science to Build Communities Around Data
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … 1000 fungal genomes to create two reference genomes for all fungi families — essentially, the foundation for an … groups of fungi. The 1KFG project has brought together over 400 proposal collaborators and co-authors with affiliations …
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