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Multi 'omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone
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Waiting to Respire
… than two billion years ago, cyanobacteria acquired the ability to produce their own food and generate oxygen as a … diverged from the bacterial tree before Cyanobacteria and its contemporaries. Margulisbacteria were named for Lynn … the ancestor of all these groups may have been an anaerobe who relied on fermentative metabolism and hydrogenases. …
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JGI & KBase at PAG XXVII
Diego, Calif. Representatives from the DOE Joint Genome Institute (JGI) and the  DOE Systems Biology Knowledgebase … Genomic Science on current and ongoing developments toward integrative biology. Researchers who are applying genomic sequence information to BER-funded …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… researchers across major ecosystems and disciplines who are developing and applying laboratory ecosystems to help transition microbiome science from largely observational to … This conference is inspired by the vision of standardized fabricated ecosystems (EcoFABs) designed for precise …
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Finding the Fermenters
… to convert food into energy. However, in environments with little or no oxygen, life had found other ways to … the genomes and predict the metabolic abilities of these microbes. The Impact This study illustrates how the research … an online interactive browser – contains the phenotypic records of 8,350 organisms along with 4,355 genomes and 13.6 …
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Doubling Down on Known Protein Families
… computational approach, researchers confirm microbial diversity is wilder than ever. Imagine researchers exploring a … Nature highlights the vast array of functional diversity of microbes through a novel approach to better understand … and the functions they perform, artificially replicating a whole community is impossible.  Metagenomic sequencing …
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SPRUCE-ing Up Science
… lessons on presentations to peatlands Travis Lawrence sits in his backyard in Tennessee — the birds are chirping and a soft breeze … interning, he recalls interacting with renowned scientists who were involved in the Human Genome Project, or …
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The JGI announces 2024 awardees for our Community Science Program annual call
Schulman, Bram Stone and Jana Voriskovaa The JGI is excited to announce the fifteen scientists selected for our … of successful CSP proposals this year,” noted Tanja Woyke, who heads JGI’s User Programs. “These PIs have proposed … questions relevant to the DOE’s mission, and I look forward to seeing their outcomes.” The annual CSP call is focused …
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JGI Announces 2025 New Investigator Portfolio
… year, the JGI searches for novel research projects from PIs who have not led any previously accepted proposals.  The New Investigator call , part of our  Community Science Program , allows us to work and share our tools with a widening circle of researchers whose work aligns with DOE missions .  Below find a list of …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… internship program between the DOE Joint Genome Institute (JGI) and University of California (UC), Merced. What … represents part of our long term efforts to contribute towards a diverse workforce and scientific community (working … J. Nathaniel Brown was a 2022 graduate student intern who is now a graduate researcher in Jing Xu’s lab and a …
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Building Sphagnum Genomic Resources
… cycling impact.   The Science Enabled by the JGI’s Community Science Program (CSP), researchers are developing a … cycling is a carbon flux regulator since sulfate-reducing microbes prevent methane production by routing the carbon … oxidation. The findings lead them to speculate that these microbes could use the same pathway for either sulfur …
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Taking Stock of the Known and Unknown Microbial Space
Metagenomic datasets could help map out microbial diversity hotspots Over the past few decades, advancements in … microbial diversity we know about, and proposes a path forward to curate and cultivate what is still unknown.  “We took … art of hands-on microbiology and experimental validation.  Microbes run the world, playing key roles in regulating …
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