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EcoFABs: advancing microbiome science through standardized fabricated ecosystems
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Pinning Down a Piece of Photosynthesis
… are easy to point out. Plants, algae and cyanobacteria create the air we breathe and the fuel for food webs as they … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … unknown or uncertain function. These genes would allow the team to express this library of encoded proteins at high …
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team led by researchers at the University of California, … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Learning to Look
… readers need to look for a number of distinguishing features. Several characters may be spotted with a striped … As described July 22, 2019, in  Nature Microbiology , a team led by scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an …
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The Experiment Data Depot: A Web-Based Software Tool for Biological Experimental Data Storage, Sharing, and Visualization
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
Researchers looked across many organisms to see that aminotransferase enzymes have evolved mix-and-match … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … kingdoms, with archaea having around 15, eubacteria around 25, and eukaryotes having slightly larger numbers due to …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At … of virus-host interactions opens the possibility of using phages to engineer microbial communities. One day, … this program,  described in Plos Biology , the research team led by scientists at the U.S. Department of Energy …
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2022 Progress Report
Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase … Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision The …
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of … complex and difficult to sequence and understand. A team of researchers led by Algal Genomics Program lead Igor … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … this work sets up protocols and pipelines that other teams can use around the world. These tools give researchers …
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Cultivating Symbiotic Antarctic Microbes
… and ‘omics techniques to experimentally determine that Nanohaloarchaeota are symbionts, rather than free-living … and the biosphere), including the global carbon cycle. The JGI is sequencing large numbers of microbes and microbial … ecological consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental …
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Viruses Reprogram Cells into Different Virocells
… be a duck. But if the duck gets infected by a virus so that it no longer looks or quacks like one, is it still a … U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … (FICUS) initiative through an award to MBD and MBS (#2582) and used resources at the DOE Joint Genome Institute …
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