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Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system
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Chapter Five The Sphagnum Genome Project A New Model for Ecological and Evolutionary Genomics
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Trent Northen
… the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic … to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the … Microbiology 2019 doi.org/10.1038/s41564-019-0449-y … 2023 Fellow of the American Association for the Advancement …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR … Generating these datasets opens up the possibility of new insights across ecosystems and research teams. Even …
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Biotech Partners
They encourage students to pursue personal, academic, and professional development experiences through in-classroom … Our interns say their experiences allowed them to:  Learn new skills. Experience industry-level work and coding. …
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Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub … viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome … viruses of archaea and bacteria ( PLoS Biol , 2023). These tools have significantly advanced the field by …
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New Family of Tungstate-Responsive Transcriptional Regulators in Sulfate-Reducing Bacteria
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Coniella lustricola, a new species from submerged detritus
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Extracting the Secrets of Secondary Metabolites
… survival, may now be easier to characterize following a proof-of-concept study in which researchers paired CRISPR and … luminescens and its secondary metabolites work could yield new tools for pest control. Secondary metabolites are highly … of CRAGE and CRISPR could potentially allow for introducing CRISPR into other bacteria, thereby enhancing …
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Ian Blaby
… biology and functional genomics. Prior to joining the JGI, he was a group lead at Brookhaven National Laboratory where he focused on functional genomics of phototrophs. Through this and post-doctoral positions at … Frontiers in Bioengineering and Biotechnology. 11. 2023 Liu et. al., Bacterial genome editing by coupling …
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MGM Workshop at Fisabio Summer School 2025
Register here The workshop is addressed to students and professionals of biology, biomedical research, the health sciences and … microbiome. The workshop will train participants in state-of-the-art analytical methods in this area, by means of …
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