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John Vogel
… the evolutionary and practical significance of plant pan-genomes including understanding polyploid genome evolution … Sasse, et. al.J. 2019 Multilab EcoFAB study shows highly reproducible physiology and depletion of soil … Diversity in Brachypodium distachyon : Deep Sequencing of Highly Diverse Inbred Lines 2014 Plant Journal 79: 361–374 …
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JGI@25: Roots of a Mutualist Relationship
… (INRAE). Today, there are nearly 200 mycorrhizal fungal genomes publicly available on the fungal portal MycoCosm, many sequenced through the JGI 1000 Fungal Genomes Project.       Francis Martin on the main impact of …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of … microorganisms had a close relationship. Then, using metagenomes and metatranscriptomes generated by the U.S. … (Berkeley Lab), as well as publicly available metagenomes, they analyzed both host and hitchhiker genomes for …
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Publication Policy
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Overview of the Genomes OnLine Database (GOLD)
TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …
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Tanja Woyke
Eberhard Karls University of Tübingen, Germany … 2018-2023 Highly Cited Researcher, Biology and Biochemistry, top 1%, … Biotechnology 35, 725-731. Mukherjee et al. 2017. 1,003 reference genomes of bacterial and archaeal isolates expand coverage …
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Toward More Efficient Artificial Photosynthesis
… processes and use it as a sustainable resource for making high-value bioproducts. As a step toward the long-term goal, … utilize the excess carbon from the atmosphere for producing high value bioproducts. Global temperatures have been rising caused by high levels of carbon dioxide in the atmosphere. The work …
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Triggering Morel Fruiting
… external source.  The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information … contingent fruiting in the wild, this technique provides a highly reproducible system which allows the black morel to … during morel fruiting. The above observation revealed a high capability of morel to mobilize organic carbon from …
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The Power of One, Amplified
… that were missed within paired metagenome assembled genomes (MAGs), and that dominant populations varied with … BC Parks). In these springs, temperatures can reach as high as 80°C (~190°F), yet microbes thrive here. The … more ideas, similar to the sharing of genes within a highly recombining microbial population. This work showcases …
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Model Fern Reveals Insight into DNA Thievery in Ferns
Open Green Genomes hits milestone with C. richardii The Science Fern … Community Science Program. The OGG has set out to generate high-quality genome assemblies and annotations for 35 species …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… uncover the mechanisms behind sorghum’s capacity to produce high yields despite drought conditions. The field experiment …
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Enlarging Windows into Understanding Gene Functions
… it can also serve as a stepping stone to studying many genomes simultaneously through multiDAP, which allows … approaches of Biotin DAP-seq and multiDAP allows for ultra high throughput discovery of transcription factor binding … User science we have implemented these two new methods as a high-throughput JGI capability supported by liquid-handling …
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