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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to … the largest class of fungi, by lifestyles. The machine “learned” to identify data generated in part through … major food crops and feedstocks for biomass and biofuel production. Learning about the ecology and evolution of  …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do anything, they must find a host, and not just any host will do. … like  carbon fixation , nitrogen cycling and methane production. Meanwhile, environmental viruses are constantly …
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Forming Scientific Connections and Building Community
The 11th cohort of JGI-UC Merced interns pick highlights from their summer experiences. This year the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, …
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Refining the Process of Identifying Algae Biotechnology Candidates
… to summary above^ as well ] The Science The recipe for growing algae as a source of sustainable biofuels seems fairly simple: place these algae in a … datasets for algae that can be used for large-scale production of biofuels and bioproducts. At NREL, Luke Dahlin …
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JGI Accepts 17 Proposals for Community Science Program
Monitoring Inter-Organism Interactions Within Ecosystems Latest portfolio of approved … by identifying the algal regulators that could boost lipid production. In their approved proposal, Frederick Colwell of …
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New Research Sheds Light on Diversity in the Deep Sea
Microbial communities living near hydrothermal deep-sea vents hold vast potential for … They also produce a range of novel enzymes and other biomolecules that could potentially be applied to biotechnology … applications in biogeochemical engineering,  biofuel production and more. … This work was funded by the …
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Alabama A&M Interns Access An Abundance of Knowledge
In 2024, the DOE Joint Genome Institute and Alabama A&M University piloted an internship … and investigate how transporter proteins regulate the production of root exudates, which overall influences the …
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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper , … in turn affecting environmental and human health, energy production and agriculture. Understanding the compositions …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … working on identifying switchgrass genes related to biomass production, drought tolerance, and other traits that make it …
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Picking Up Threads of Cotton Genomics
Analysis reveals cotton genome stability across global lineages . Come harvest time, the cotton fields look like … around the world whose livelihoods depend on cotton production, and the crop’s annual economic impact of $500 … in the fabric of our lives. In the United States, cotton production centers around two varieties: 95 percent of what …
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team … for bioenergy researchers looking to improve the industrial production of sustainable biofuels and bioproducts. …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … being waged. In this JGI@25 video, Susan Lucas, former JGI Production Department Head and current ESnet Deputy Director …
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