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Discovery of Novel Plant Interaction Determinants from the Genomes of 163 Root Nodule Bacteria
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How Microbes Can Protect Plants in Drier Straits
… A mini-episode looking at the efforts of Pankaj Trivedi, whose New Investigator proposal was recently approved through the JGI Community Science Program, to use microbiome science to help …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… Multiple 2021 HPCwire Awards ” on the Berkeley Lab Computing Sciences site. Lawrence Berkeley National Laboratory … Research Scientific Computing Center (NERSC), the DOE Joint Genome Institute (JGI), and the Energy Sciences Network … went to the Berkeley Lab team comprised of JGI and ExaBiome Project team, supported by the DOE Exascale Computing …
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Cultivating Symbiotic Antarctic Microbes
… cultures reveal they are symbionts and not free-living organisms. The Science Researchers employed multiple … consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and … in 2011, Nanohaloarchaea are part of the DPANN (Diapherotrites, Parvarchaeota, Aenigmarchaeota, Nanoarchaeota, and …
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Massie S. Ballon
… Massie S. Ballon is the Communications and Outreach Manager at the JGI. Through … and collaborators.  Ms. Ballon is a molecular biology-trained science communicator with extensive experience shaping compelling narratives for diverse audiences. In her … Click to see the coverage of JGI-enabled science highlighting user research, newly accepted proposals, and outreach …
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Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution
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A Genomic Encyclopedia of the Root Nodule Bacteria: assessing genetic diversity through a systematic biogeographic survey
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Rex Malmstrom
… genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His group also handles the … also carries out custom preparative work for difficult user projects, including those that require fluorescence … activated cell sorting and non-standard molecular protocols.  Finally, his team utilizes new technologies, e.g. …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for … ago, the  Genomes OnLine Database has matured from six projects on a spreadsheet into a flagship  genomic metadata … repository, making curated microbiome metadata that follows community standards freely available, and enabling …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Igor Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information for every … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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User Programs
… For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for … CLOSED Who Should Apply? Investigators with research projects that integrate the expertise and capabilities of … request capabilities from both JGI and the Molecular Foundry.  Submission Deadline Feb 19, 2026 (Proposals due …
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Triggering Morel Fruiting
… Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … source.  The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information for every … and biochemical processes driving the fruiting of soil saprotrophic mushrooms. To date, how the nutritional …
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