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Genome Calligrapher: A Web Tool for Refactoring Bacterial Genome Sequences for de Novo DNA Synthesis
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… synthesis support, sequencing, integrative -omics, and data mining, empowering research collaborators to take on … to better understand a special class of compounds, or secondary metabolites, called terpenes. Terpenes are made … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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JGI@25: From Life at the Extremes to Editing Genomes
… past few years they have partnered with JGI’s Microbiome Data Science group led by Nikos Kyrpides , mining the … accessible metagenomic datasets from a wide variety of ecosystems around the world, conducting iterative searches … Tyson GW et al. Community structure and metabolism through reconstruction of microbial genomes from …
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of … proteins. PhycoCosm’s built-in connection to the DOE Systems Biology Knowledgebase (KBase) also allows … in algae. PhycoCosm joins other online data portals and tools created by JGI researchers, including the Integrated …
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A novel open-source cultivation system helps establish the first full cycle chemosynthetic symbiosis model system involving the giant ciliate Zoothamnium niveum
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Genome Insider
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Identifying the Microbial Cleanup Crew at a Superfund Site
… , they were able to analyze the resulting metagenomic data. (Data from the project are available on the  JGI Genome … being monitored and the team plans to continue collecting data to understand the ERD process.  … The work (proposal:  …
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Pinning Down a Piece of Photosynthesis
… and her team hypothesized that DUF2470 was key to iron metabolism, and renamed it to Domain Related to Iron, or DRI for short.  A kaleidoscope of structure-function data To study DRI experimentally, Blaby-Haas, Grosjean and … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Genomic Analysis of Aspergillus Section Terrei Reveals a High Potential in Secondary Metabolite Production and Plant Biomass Degradation
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Project Management Office
… of samples for sequencing, or the submission of sequencing data for synthesis – the DOE requires that all work …
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PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens
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NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks
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