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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven studies … nearly 10,000 new annotations of fungal mitochondrial genomes — the DNA found inside mitochondria, the … as reliable markers for classifying species and studying diversity in complex biological systems. By making the tools …
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Workforce Development & Education Outreach
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Rex Malmstrom
… genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His group also handles the … mycorrhizal fungi. Microbiome 199 Needham, D.M. et al. 2019. A distinct lineage of giant viruses brings a rhodopsin … PNAS 113 (28), E4069-E4078 Bendall, M.L. et al. 2016. Genome-wide selective sweeps and gene-specific sweeps in …
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User Advisory Committees
… All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National … and strategic objectives of the microbial and metagenome programs. The committee serves as the program's key …
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Cultivating Symbiotic Antarctic Microbes
… consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and … dependent on the other for required nutrients—is genome size. The obligate symbiont’s genome is often reduced compared to that of a free-living …
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Crysten Blaby-Haas
… user capability between the JGI and Molecular Foundry for genome-encoded biomaterial discovery, design, and … S, Blaby-Haas CE, Friedrich T, Daldal F, Koch H. (2019) The  cbb 3-type cytochrome oxidase assembly factor … into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta). …
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First Monoploid Reference Sequence of Sugarcane
… Sorghum genome serves as a reference for the highly complex … now underway as part of the JGI Community Science Program (CSP), a critical factor in developing sugarcane as a … in part on these positive results, in 2017, JGI approved a CSP proposal from the international team to complete the …
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Comparative Analyses of Four Reference Genomes Reveal Exceptional Diversity and Weak Linked Selection in the Yellow Monkeyflower (Mimulus guttatus) Complex
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Exploring the limit of metazoan thermal tolerance via comparative proteomics: thermally induced changes in protein abundance by two hydrothermal vent polychaetes
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Global Diversity and Biogeography of the Zostera marina Mycobiome
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Diverse uncultivated ultra-small bacterial cells in groundwater
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Structure, function and diversity of the healthy human microbiome
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