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H2-saturation of high affinity H2-oxidizing bacteria alters the ecological niche of soil microorganisms unevenly among taxonomic groups
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Characterization of the Clostridium thermocellum AdhE, NfnAB, ferredoxin and Pfor proteins for their ability to support high titer ethanol production in Thermoanaerobacterium saccharolyticum
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… in the ~ 30 – 100ng range. Note that beyond quantity, input quality (i.e., presence of “intact” high-molecular weight DNA) is an important factor as well … deeply are metagenomes sequenced? A:  For the next call ( CSP New Investigator ), up to 4 long-reads (PacBio) …
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A Grass Model to Help Improve Giant Miscanthus
… of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass … the hybrid origin of giant miscanthus ( M. x giganteus ), a high-yield candidate bioenergy feedstock known for its … Giant miscanthus is a triploid, the result of a highly productive cross between a diploid M. sinensis and a …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … have been sequenced from curated DSMZ isolates, for which quality DNA has been provided by the team. These strains … MAGs from environmental sequence fragments can lead to high-quality yet incomplete genome sequences which could …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… Communications , researchers describe a strategy to recover high value products from human waste. They   genetically … of Energy national user facilities – the DOE Joint Genome Institute and the Molecular Foundry – both located at … in the real world. They estimated that a kilogram of high quality HAp from osteoyeasts would cost $19 to make, and it …
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Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network
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Fungal Friends or Foes in Plant Roots
… plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated fungi. Their analysis … work was partly enabled by a JGI Community Science Program (CSP) proposal led by INRAE’s Francis Martin that contributed …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s … website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  … more powerful and flexible tools available for building high performance user interfaces and backend data systems. …
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Finding the Fermenters
… including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … browser that allows other researchers to study the genomes and predict the metabolic abilities of these … GOLD and IMG data portals to get information about the genomes and genes of the organisms on the list. They also …
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Mike Sneddon
… in the Data Science and Informatics Department at the Joint Genome Institute. His team of engineers and scientists … C., Scannell, D., Serber, Z., Shock, J., Sneddon, M., and Yang, X. Metagenomic library and natural product discovery … Biology Knowledgebase. Nature Biotechnology 36, 566–569 (2018). Sneddon, MW, Pontius, W, and Emonet, T. Stochastic …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… sunlight and frigid temperatures. These waters also contain higher concentrations of the essential trace metal zinc, … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … (Berkeley Lab) through the JGI Community Science Program (CSP) .  Through this collaboration, in 2017, they published …
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