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Metagenomic reconstructions of bacterial CRISPR loci constrain population histories
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Development and Application of a High-Throughput Functional Metagenomic Screen for Glycoside Phosphorylases
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Simon Roux
JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development of novel computational … machine learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria. PLoS …
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Learning to Look
… expands inovirus diversity. To answer the question, “Where’s Waldo?” readers need to look for a number of … the way we currently isolate and extract viruses,” said the study’s lead author Simon Roux, a JGI research scientist in … search tool combed through more than 70,000 microbial and metagenome datasets, ultimately identifying more than 10,000 …
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User Support
… define the scope of work and outline roles and responsibilities resulting in a formal Statement of Work (SOW). … work performed at the JGI is initiated via the Work Initiation Process (WIP) interface. To submit a proposal, users must … JGI will need to register and create a login at https://signon.jgi.doe.gov ). Once users are notified that their …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… benefits to address climate change: pulling atmospheric carbon into soil and boosting biofuel feedstocks with less … fertilizer. For millions of years, underground fungi have lived in symbiosis with plant roots. Plants provide … sharing.  Recently, researchers have been able to study both sides of this interaction up close, using RNA …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… benefits to address climate change: pulling atmospheric carbon into soil and boosting biofuel feedstocks with less … fertilizer. For millions of years, underground fungi have lived in symbiosis with plant roots. Plants provide … sharing.  Recently, researchers have been able to study both sides of this interaction up close, using RNA …
Learn more
CSP Large Scale Call
The Community Science Program Large Scale Call is focused on genomic science projects that address sustainable biofuel and bioproducts production, leveraging systems-based approaches to unravel functional capabilities of plants, microbes and microbial …
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Boosting Small Molecule Production in Super “Soup”
… from engineered yeasts still work in cell-free environments? (Spoiler: Yes.) Think of cells as tiny factories: … of sustainable chemical products,” said Jewett, one of the study’s senior authors. “But this has been done most … graduate student Blake Rasor. He and Yi, one of the study co-authors, have maintained a regular shipment …
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Nikos Kyrpides
… comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial Genomes and Metagenomes Program since 2011. Prior to joining the DOE … at the University of Illinois at Urbana-Champaign and at Argonne National Laboratory. Dr. Kyrpides’ research focus on …
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Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens
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Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw
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