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… 90 species. “One unique thing about this work was our focus on all the kingdoms, including animals, plants, bacteria, … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Berkeley Lab. In addition to … metabolisms that function with a toolkit of enzymes. It’s useful to differentiate these enzyme tools into two groups: …

… funded by a DOE training grant.  Building off the previous year’s project, undergraduate interns Tamyra Long and … project - they also worked with Sharon Greenblum from the User Support Analysis team to analyze plant microbiome data … They also learned how to log on to Dori – a computer cluster owned and operated by the JGI and Berkeley Lab – to …

… carbon and cycle key nutrients like nitrogen and phosphorus.  This way, the fungi of forest soils hold keys to tree … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … work sets up protocols and pipelines that other teams can use around the world. These tools give researchers a way to …

… microbial ecosystems. These communities harbor tens of thousands of different organisms who all consume different … to get all of the information that SIP offers, researchers must take on a fairly time-intensive process. The isotope … take hours to months, followed by weeks of tricky, laborious lab work to analyze samples from one experiment. Starting …

… an array of experiments at universities and national user facilities, researchers found that this protein detects … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … University of California at Berkeley, as well as other DOE user facilities — Brookhaven National Laboratory’s National …

… Management Group, attended a conference in Florida to discuss a JGI pilot project involving soil sampling in the … Joint Genome Institute (JGI) , a DOE Office of Science User Facility. She took special interest in it because she credits her high school teacher with inspiring her …

… now available to the global research community able to not just analyze but also create DNA sequences mimicking an array of microbial life. By leveraging massive user-generated datasets at the JGI and other publicly … complex biological sequences such as biosynthetic gene cluster structures. Zhong Wang, a computational biologist at …

… Using a novel computational approach, researchers confirm … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … concealed within the “dark” functional realm. Their focus sharpened on deciphering the intricate world of protein …

… and functions of environmental microbes. Researchers can use the tool to correlate protein annotations with ratios of … that provide insights into the nutrients that are being used and cycled in different environments. It also shows how … affect metabolic activity of microbiomes. This is key because these examples were picked from some of the top …

… The work aligns with the ETOP mission of providing JGI users with the most current technology and expertise in … and soil from the Angelo Coast Range Reserve in California. Using DAS Tool on data from soil samples, researchers were … genomes with >90% completeness. These results, noted JGI User Programs Deputy Susannah Tringe , suggest that …

… A fungus relies on bacteria to regulate key components of its … evolved from a parasitic interaction with their soil fungus host, Rhizopus microsporus . Researchers found that endobacteria …

… discovered more than 6,000 mitochondrial sequences previously unrecognized within existing public databases and … fungi produce and manage energy at the cellular level. Because the annotations are standardized and span the full … and data available through MycoCosm — a platform widely used across the research community — the work lowers …