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User Support Analysis Group
… computational analysis for new technology development and JGI user science projects. We perform analysis for diverse experiment types, with main focus areas being genome variation, …
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A call for standardized classification of metagenome projects
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JGI@25: Building a Better Bean
In honor of the JGI's 25th anniversary in 2022, we have revisited a number … our collaborations and capabilities to enable great science that will help solve energy and environmental … . “Common beans are a major societal crop for those with severely limited income,” McClean said. “Common bean is …
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Events
…  Learn about meetings the JGI is hosting:   … New Lineages of … (NeLLi) … Viral EcoGenomics & Applications (VEGA)  …   The JGI is represented at conferences year round; find out where …
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Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert
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Adaptation to Environmental Extremes Structures Functional Traits in Biological Soil Crust and Hypolithic Microbial Communities
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Emiley Eloe-Fadrosh
Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial … in human microbiome research at the Institute for Genome Sciences at the University of Maryland School of Medicine … et al. 2023. Cohort-based learning for microbiome research community standards. Nat Microbiol . 8(5):751-753. Nayfach …
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A Complex Confection Decoded: Sugarcane Reference Genome
Sugarcane was the last major crop without a reference quality genome and now crop researchers … The Impact In providing a reference sugarcane  genome , the JGI provides foundational genetic information that crop … Institute. The work was partly enabled by the JGI’s Community Science Program; in 2018, a monoploid reference …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have revisited a number … our collaborations and capabilities to enable great science that will help solve energy and environmental … began to offer a window into viral existence. Along with highlighting the viruses in a given sample, …
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DOE Metrics
FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal Actual … hours.   FY 2024 DOE Metrics There were 2,456 unique* JGI users in FY2024 , which includes Principal Investigators …
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Virus-Microbe Interactions of Mud Island Mangroves
… his dissertation. Some of his research was conducted at the JGI through the DOE Office of Science Graduate Student … laboratories or national user facilities. Baker had worked with the JGI through a Community Science Program (CSP) proposal, and Rambo’s …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… , employ the evolutionary strategy we are far more familiar with: differentiating into male and female sexes. For the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … The JGI sequenced the shrub willows through the  Community Science Program , using long-read sequencing to …
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