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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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Gamete expression of TALE class HD genes activates the diploid sporophyte program in Marchantia polymorpha
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Identifying the Microbial Cleanup Crew at a Superfund Site
Analysis reveals the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection Agency … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Webinars on Offerings & Capabilities
… are a list of webinars that can help you through the submission process by better understanding the capabilities and … when applying to the FICUS call. (Feb. 21, 2024) More JGI webinars below …
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Better Genome Editing for Bioenergy
… at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility. Y. lipolytica … of researchers sought to disrupt every gene in the genome with CRISPR-Cas9 in order to interrogate each one’s … if the gene is actually essential. Through the JGI’s  Community Science Program , the scientists thus set out to …
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GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser
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iPHoP: A Matchmaker for Phages and their Hosts
… computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do … these hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of … prediction approaches, researchers have created a new program called iPHoP (pronounced “eye-pop”,  freely …
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Synthetic Biology Informatics Group
… develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  Representative software includes: gRNA-SeqRET , … and associated tools, which track samples through the JGI’s Synthetic Biology pipeline as well as provide process …
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Sequencing and functional validation of the JGI Brachypodium distachyon T‐DNA collection
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Picking Up Threads of Cotton Genomics
… fields look like popcorn is literally growing on plants, with fluffy white bolls bursting out of the green pods in … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … analysis on JGI’s plant data portal  Phytozome , which is a community repository and resource for plant genomes. They …
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Community standards and future opportunities for synthetic communities in plant–microbiota research
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 … Platform Lead where she manages metabolomics production for community sequencing projects and heads R&D efforts to … over 10k samples/year, Dr. Louie and her team work with other JGI scientists in development of new, advanced …
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