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Tracking the Origins of Methane-Producing Microbes
Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane Metabolism. … Methane-producing archaea are estimated to produce 500 million tons of methane a year, which is over half the total … separately. From these samples, 111 metagenome-assembled genomes (MAGs) were recovered, most of them archaea. The …
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Training the Next Generation of Talent
New Graduate Internship Program Builds Bridges Between DOE JGI, UC Merced Days after … Office of Science user facility, Keedrian Olmstead was back on campus at the University of California, Merced to start … challenges UC Merced graduate students with individual projects at the DOE JGI that provide hands-on experience in …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information for every …
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The Case for Conservation
How sex chromosomes “older than dinosaurs” could help improve crop yields.  The Science The fire moss Ceratodon purpureus is a short plant with a complex genome . Now, … heavy metal contamination, and drought. The moss genomes’ metabolic pathways could lead to the discovery of …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
Bacterial enzymes play second fiddle to those from fungi when it comes to breaking … to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from … sequences assembled as part of its 1000 Fungal Genomes Project . To map microbial activity, Baldrian’s team …
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Gotta Catch 'Em Gall
… ways to engineer plants. So they’ve looked into wasps that program oak trees to raise their young in structures called … In this episode, hear from Kasey and Patrick about how this project unfolded, and how they worked with the JGI's …
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The Genome Portal of the Department of Energy Joint Genome Institute
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The Phaeodactylum genome reveals the evolutionary history of diatom genomes
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JGI at the AGU Fall Meeting
Meeting, with the theme “Science is Society,” hosts sessions in New Orleans and online. Register for the meeting … context for thousands of newly sampled microbial genomes from North American watersheds (Invited)” 4pm CST … poster B45O-1813  : Maggie Bowman, PNNL: “EMSL’s 1000 Soils Project: core collection strategy and data types available” …
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DOE Metrics
FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal Actual Total* Actual % of Goal … counted once, even though an individual may have several projects/roles. Sequencing Quarter Total Bases (Trillions) … the interpretation of microbial, metagenomic, or plant genomes. [Download PDF] End-of-year Goal – Develop one new …
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Learning to Look
Machine learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” readers need to look for a number of … are filamentous viruses with small, single-stranded DNA genomes and a unique chronic infection cycle. “We’re not …
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Modulation of sensory perception by hydrogen peroxide enables Caenorhabditis elegans to find a niche that provides both food and protection from hydrogen peroxide
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