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Covariation of hot spring geochemistry with microbial genomic diversity, function, and evolution
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Refining the Process of Identifying Algae Biotechnology Candidates
… multiple institutions have sequenced and analyzed the genome of an alga that thrives in saltwater (halotolerant) … that the United States has the capacity to produce enough algal biomass to yield the equivalent of 10-27 … analysis effort for a more complete picture. The team annotated the algal genome and analyzed its metabolome to …
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Gene Expression: From On-Off Switch to Dial
… Compared to the traditional way, which leverages an all-or-nothing approach to expression, scientists can now opt for … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … that this singular library synthesized by JGI was versatile enough for use in multiple applications. This …
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Forming Scientific Connections and Building Community
… This year the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … mentors, and their summer projects. Each intern also mentioned what they loved about their internship. Efosa … Mentors: Yi Zhai & John Vogel Project: Characterization of Brachypodium distachyon root transporters in …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a close relative and model … the University of Texas at Austin produced a high-quality reference sequence of the complex switchgrass genome. The …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery from metagenomes. The Science Through the … metagenomic data from Crystal Geyser in Utah (work also done by the Banfield lab in collaboration with the JGI), … draft genomes with >90% completeness. These results, noted JGI User Programs Deputy Susannah Tringe , suggest …
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Metabolomics
… this identification, metabolomics enables functional genome annotation, improves understanding of the role small molecules …
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Community Science Program
… Areas . Through this program, the DOE aims to advance genome science-based scientific research from a broad range … The  New Investigator and Functional Genomics calls do not require an LOI.  Projects will be chosen based on … of a project, the JGI makes the assemblies, gene annotations, and analyses available to the community at large. …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… Novel archaeal lineage found in Yellowstone may have been important in early Earth conditions. The … the JGI’s Community Science Program , the team used metagenome assemblies, transcriptomes and single amplified … microbial mats at the geyser sites is providing just enough oxygen to the Marsarchaeota. “Proving that is an …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… Clement Coclet and Simon Roux Tyrome Sweet and mentor Jonelle Basso Yumary Vasquez and mentor Juan C. Villada … graduate degree, then maybe like think about doing a PhD or not in the future.  Feng Yu : So for me, previously I had I … concern before I started my internship was whether I had enough experience to make really good contributions to the …
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Microbial Genomics & Metagenomics (MGM) Workshop
… has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on … designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… For the last 15 years, Ray Turner has been one constant for the Joint Genome Institute. On July 1, 2020, that all changed. Ray’s … ride to Berkeley from the Peninsula is still good. “I noticed right away,” said Ellen Ford about Ray’s personal … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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