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Plotting a Model for Virus-Host Warfare Deep Below Ground
… are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are abundant … yet abundant subsurface organisms was  recently reported in Nature Communications. The work was co-led by … Berkeley National Laboratory (Berkeley Lab). To learn more about how microbial populations respond to virus infections, …
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Len Pennacchio
Pennacchio joined the DOE Joint Genome Institute and has focused on applying state-of-the-art molecular methods to … Department of Genetics at Stanford University where he uncovered the genetic cause of a rare form of human epilepsy … in Genome Biology & Technology (AGBT)” … Education … About the Deputy of Genomic Technologies … Selected …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… snails, UC Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first sampled the … Nuevo is, historically, a fishing town and we know little about its coastal microbial ecology. We also know little …
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Adopt-A-Genome
… the literature. These students analyze the genomes, write reports, and publish first-author papers, making the data … (JGI) and Matt Escobar (California State San Marcos) about how the Adopt-A-Genome project got started. Plus, Kalyani Maitra (California State Fresno) and two …
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When “The Blob” Made It Hotter Under the Water
… began in late 2013, when a large patch of warm ocean water about a third the size of the United States began forming in … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … shared their findings in Communications Biology . They reported that the heatwave caused the microbial populations …
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Crysten Blaby-Haas
Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular Materials … Molecular Foundry, a nanoscale research and knowledge-based user facility at Berkeley lab. She earned her PhD in … JGI and Molecular Foundry for genome-encoded biomaterial discovery, design, and engineering. … PhD, Microbiology and …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub … and around Earth outnumber the stars in the Milky Way, viruses outnumber the microbes by at least another order of … community. Kyrpides’ project, “ Advanced analytics for uncovering virus dynamics and functional potential ," is among …
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The Expanding Universe of Methane Metabolisms in Archaea
… insights into an ancient metabolism. Methane is a greenhouse gas 20 times more potent than carbon dioxide. Billions … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly … of Nature Microbiology . Their study focuses on the discovery of new populations within the Korarchaeota, one of …
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Synthesis
The team has three subgroups: Synthetic Biology Lab : a user science group dedicated to user project design, assembly, and quality control Strain … assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables users to validate …
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Help from Citrus’ Bitter, Hardier Cousin
… disease-resistance that could prove fruitful for saving Citrus from greening disease. You’ve probably never heard of … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … in  The Plant Journal.  this study included the discovery of candidate genes that confer resistance to citrus …
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Frederik Schulz
… leading the New Lineages of Life Group. His research is focussed on the discovery of novel bacterial, archaeal and eukaryotic microbes … 9 (1), 1-9 Roux et al. (2018) Minimum Information about an Uncultivated Virus Genome (MIUViG). Nature …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. Most of those … send their samples in from afar, without ever hearing much about the sequencing lab. So today, Chris Daum walks through …
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