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The ectomycorrhizal fungus Paxillus involutus converts organic matter in plant litter using a trimmed brown‐rot mechanism involving Fenton chemistry
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High-Quality Draft Genome Sequence of Desulfovibrio carbinoliphilus FW-101-2B, an Organic Acid-Oxidizing Sulfate-Reducing Bacterium Isolated from Uranium(VI)-Contaminated Groundwater
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Thermus sediminis sp. nov., a thiosulfate-oxidizing and arsenate-reducing organism isolated from Little Hot Creek in the Long Valley Caldera, California
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Fungal Friends or Foes in Plant Roots
… apparent. Similarly, the microbes found in plant roots may have unknown roles. Some plants and fungi have mutually … fungi can form such symbiotic partnerships. To learn more about these other plant-fungal relationships, an … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Back in the Lab: the 2023 Summer Intern Experience
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Introducing New Members of the JGI User Executive Committee
… The JGI welcomes three new members to the JGI User Executive Committee (UEC) : Roland Hatzenpichler of … JGI offers, as well as proposal review procedures and the organization of the JGI Annual Genomics of Energy & Meeting. …
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Silver age of GOLD introduces new features
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … them. GOLD provides manually curated metadata resources for organisms and environmental samples. The database aggregates … in centigrade, and more.  The four level project organization system implemented in GOLD consist of: Studies, …
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Katherine Louie
… the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass spectrometry-based techniques, the … turnover, DNA-SIP for helping identify active micro-organisms within complex communities, and custom software … composition of the root-associated microbiome in maize (Zea mays). Scientific Reports. 2021. …
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Virus Discoveries that Keep Getting Bigger
… work — have quickly accelerated understanding of giant viruses. The Science In the last thirty years, in environments … over the world, scientists have discovered giants among viruses. Now categorized in their own phylum,  … simultaneously, these genomic studies provide information about virus hosts. As a result, the outcomes of these …
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Cultivating Symbiotic Antarctic Microbes
… ecological consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental … researchers have been able to gain further insights about how microbes have adapted to thrive in polar … to be involved in DNA degradation, and these proteins may be directly involved in enabling the Nanohaloarchaeota …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… Simon Roux (Cross-field)  Jeremy Schmutz (Cross-field)  Susannah Tringe (Microbiology)  Tanja Woyke (Biology and Biochemistry)  Here’s a selection of studies these busy bees contributed to:  Giant bacteria visible to the … : Under the umbrella of the GEBA, the JGI is sequencing thousands of bacterial and archaeal genomes from diverse …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… discovered more than 6,000 mitochondrial sequences previously unrecognized within existing public databases and … that carry them were strikingly different in both size and organization: Mitochondrial genome size and structure varied … (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the …
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