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Partnerships: Myco-Ed
DNA is extracted from samples, which is then sent to the JGI for genome sequencing, assembly and annotation. … The … analysis.  MycoCosm provides data and tools via a graphical user interface, ensuring that no programming knowledge or …
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Uncovering Novel Genomes from Earth’s Microbiomes
… analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … she said. Listen to study co-author Dan Udwary talk about genome mining using the GEM catalog in  this episode …
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Crysten Blaby-Haas
Molecular Foundry, a nanoscale research and knowledge-based user facility at Berkeley lab. She earned her PhD in … Botany, 2022 – present  University of Florida MCS Advisory Council, 2022 – present Alumni Award, MCS, … of News and Views Article in Nature 608, 38-39 (2022) and Preview article in Cell  185, 2013-2015 (2022). Gallaher S, …
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Identifying the Microbial Cleanup Crew at a Superfund Site
Dehalococcoides mccartyi and  Dehalobacter restrictus,  that work together to break down PCE into the chemical … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
One Health Ruhr (OHR), and the DOE Joint Genome Institute (JGI), Molecular Biophysics and Integrated Bioimaging (MBIB) … UDE familiarized themselves with the research programs and user facilities at Berkeley Lab. Commenting on the visit, JGI Director Nigel Mouncey expressed enthusiasm about the potential of this collaboration stating, “We …
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Ancient Algae Reveal Secrets of Plant Evolution
… to terrestrial life paves the way for innovations in sustainable agriculture and clean energy. These evolutionary … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… students this past summer. This year’s cohort for the JGI-UC Merced Internship Program was brimming with … going forward. Watch this short video (below) to hear more about the summer from their own perspectives. The interns … JGI mentors are listed below, along with their project focus areas: Undergraduate Interns Andrew Lin and mentor Vy …
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John Vogel
Dr. Vogel joined JGI in 2014 to establish a plant functional genomics … to this, he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the … Nature. 463: 763-768 … 2018-present Member, EcoFAB steering committee 2014-present Chair, International Brachypodium …
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What Happens Underground Influences Global Nutrient Cycles
DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS projects. Through … the Sierra Nevada mountain range since 2014 to learn more about the microbial responses and feedbacks to warming …
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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Scaling Up Existing Skill Sets
Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced … experience working intermediately between academia and industry, which is something I didn’t even know existed before. … my Ph.D. What is/has been one of your favorite things about your JGI internship?  Doing the JGI internship has …
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