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… to study both sides of this interaction up close, using RNA sequencing to understand gene expression: one of the first … fungal cells. Using a technique called single nuclei RNA sequencing, the researchers identified different cell types … circular capture areas roughly 55-microns in diameter — about the width of a human hair. At such resolution, this …

… Sequencing technology has changed dramatically over the … before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. Last year, the JGI surpassed three Petabases of data sequenced — that’s three-quadrillion base pairs of DNA …

… (Watch SCGSR fellows Nick Reichart and Ian Rambo talk about their experiences at the JGI.) Igor Grigoriev hosted …

… of rumen-digested switchgrass, researchers isolated and sequenced DNA from rumen microbes involved in the digestion … expanded into three other universities. You can learn more about how JGI data supports higher education in this JGIota …

… can synthesize other bio-based materials. For information about licensing the patented osteoyeast for hydroxyapatite …

… candidate bioenergy feedstock crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a … of Texas at Austin produced a high-quality reference sequence of the complex switchgrass genome. The reference … At the 2021 JGI Annual Meeting, David Lowry talked about a multi-year study his student conducted involving …

… methanogens were, but they were discovered by genome sequencing, which is a much less biased approach to studying … Alternate Metabolic Pathways And there is something special about these new lineages recently tied to methanogenesis. … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …

… with metabolomics analysis.  Q: Can you give us an idea about the scale of an average study? How many samples are … The JGI is not a funding organization. Rather, it makes its sequencing, synthesis, metabolomics and data analyses … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …

… at virus infections. Their genomes include short DNA sequences that code for CRISPR systems, which help bacteria … resist foreign genetic elements by incorporating short sequences from infecting viruses and phages. In these … Berkeley National Laboratory (Berkeley Lab). To learn more about how microbial populations respond to virus infections, …

… MGEs based upon their gene content and their genetic sequences. The software was created by researchers under the … biogeochemical cycles around them. By understanding more about the genomics of MGEs and their evolution at the …

… cycling across the planet. Summary To understand more about how archaeal hosts and hitchhikers coexist, …

… degrade the plant biomass. In order to learn more about these regulatory networks in the model fungus  N. … sugars to plant biomass. One of these techniques was DAP-seq, a high-throughput method for identifying protein … and optimized by Ronan O’Malley, who leads the JGI’s Sequencing Technologies group. DAP-seq allowed the team to …