Results
… then genomics happened. Dan: Yeah, I did my first genome sequence with you. Brad: That’s right, Dan: JGI did it in … at that time, there are only two sequenced genomes of a Streptomyces , or gram-positive high GC organism. Dan: … working with you, Dan, on this one, and we said, “Well, why don’t we have you know, the bioinformaticians go against …
Learn more
… more, then I highly recommend David Hopwood’s book called “Streptomyces in Nature and Medicine.” It’s obviously focused … able to explore DNA sequencing and actually get to the DNA sequence – sequences for the genes that code for the … Something that’s you know … ALISON: Central! DAN: That’s why they called it that! But for, maybe, people who are less …
Learn more
… enzymes are, right? ALISON NARAYAN: Yes, and so that’s why I don’t like that sentence. I think that sometimes, we … association that might help? Like, if you have an unknown sequence or new flavin monooxygenases, you could say, oh … DAN UDWARY: That’s weird. I hadn’t heard that before. Why is that? Why would that be the case? ALISON NARAYAN: …
Learn more
… And at the time, it was really exciting when people would sequence [DNA]. The genome was– well, that hadn’t really … polyketide synthase and then P3. We still don’t know why 20 years later. JACKIE WINTER: It’s pretty amazing, … –of getting rid of all the non-spore formers. And yeah. And streptomyces don’t like that. So you can really, really …
Learn more
… more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes … for us– what organisms people use for genome mining, why it’s called genome mining, how the biosynthetic gene … there you go. [laughs] ALISON TAKEMURA: All the more reason why it could have been inspired by Super Smash Brothers. DAN …
Learn more
… learned a lot so much history from this conversation about why the ocean was basically unexplored until the 70s, and … about his move to microbiology, about drug discovery and why it’s so hard to succeed, and we talk about an ongoing … forward to seeing the data when it finally gets off the sequencers. The pandemic has obviously slowed JGI down a …
Learn more

