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Natural Prodcast Episode 2: The Primer, Part 2
DAN: Alright, so I think we’ve covered a little bit about why they’re important. But one of the things I did want to … live in the root nodules of plants. And these guys were sequenced, and you can see that different Frankia have … products because they’re easy to find. They grow in the soil. These are the same guys that produce geosmin. And so …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… or online catalog, I guess. So we've also been able to get soils from Purdue campus itself and been able to actually … The genes are pretty much 100% identical. We don't know why one is expressed over the other. As far as whether we're … usually serve as dimers, and then they will bind to certain sequences of DNA. And when they bind to those certain …
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Micro-Scale Applications Group
… offers the first quantitative Stable Isotope Probing (SIP) Metagenomics pipeline that utilizes internal analytical … access to cutting-edge cell sorting, DNA amplification, and sequence analysis to recover the genomes of uncultivated … now uses laser microdissection to selectively isolate and sequence microbial aggregates after first imaging with …
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Who We Are
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Natural Prodcast Episode 18: A CSP Primer
… at JGI start with sequencing, but where else did those sequences go? Like, what are the other scientific tools we … a mixture of, for example, metatranscriptome sequencing, metagenomics, single cell genomics. We even do the flow … that describe the work. In general. Scientific merit and why it’s important. The DOE mission is one of these …
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Natural Prodcast Episode 16: Marcy Balunas
… does some really exciting work there. And I thought, well, why don’t we try to go to Alaska and see what we can find … with any kind of gene cluster identification, doing it with sequence alone you have to have some kind of a template to … between chemistry and sequence to get anywhere. Like that’s why I say the more you know, the more you know because it …
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FICUS-NERSC/KBASE
… … For sequencing projects, once work is under way, raw sequence data is released to NCBI’s Sequence Read Archive on a regular basis, in accordance with …
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Natural Prodcast Episode 17: Cassandra Quave
… and culture-disconnected. Like we’ll take some soil samples and sequence all the bugs out of that or whatever. And so I was … methicillin-resistant Staphylococcus aureus . Can you share why finding treatments for these microbes is so important? …
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Examples: Successful LOIs & Submissions
… … Adaptive strategies in a cosmopolitan and abundant soil bacterium: genetic microdiversity or core metabolic flexibility? … Microbial contributions to soil carbon storage during simulated range shifts of … advanced bioenergy crops … Characterization of simplified soil communities with high and low carbon use efficiency …
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A metagenomics roadmap to the uncultured genome diversity in hypersaline soda lake sediments
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Natural Prodcast Episode 19: Bill Fenical
… learned a lot so much history from this conversation about why the ocean was basically unexplored until the 70s, and … are many others, including Streptomycetes, which are common soil bacteria. DAN UDWARY: Yeah, we talk about them a lot … forward to seeing the data when it finally gets off the sequencers. The pandemic has obviously slowed JGI down a …
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Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines
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