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… … For sequencing projects, once work is under way, raw sequence data is released to NCBI’s Sequence Read Archive on a regular basis, in accordance with …

… enzymes are, right? ALISON NARAYAN: Yes, and so that’s why I don’t like that sentence. I think that sometimes, we … association that might help? Like, if you have an unknown sequence or new flavin monooxygenases, you could say, oh … DAN UDWARY: That’s weird. I hadn’t heard that before. Why is that? Why would that be the case? ALISON NARAYAN: …

… least, talk to us, first about my definitions of things and why I am wrong, and also talk about some of the great … think the terms we should be using for what we do are, and why there and why it’s important to make those distinctions. … to approach it is more related to what JGI does, which is sequence genomes. And we just published last year in the …

… in a way. Different formulations. But the breadth of crops, the breadth of countries that we were selling … Sartoria which is a really big pathogen of wheat in cereal crops in Europe. And the molecule is derived from a natural … to some people more about down the road. Email Nigel! He’ll sequence whatever you want!  [LAUGHTER]  NIGEL MOUNCEY: We …

… about the basics of genome mining, which is using DNA sequence to identify and interpret biosynthetic, secondary … biological perspective, like what was this bacterium, and why did your group want to study it? Marnix Medema: You mean … we, for example, are really interested in metagenomes and microbiomes and figuring out which gene clusters are …

… if they are of relevance to bioenergy-related feedstock crops or model plants. Projects targeting marine systems …

Gardeners and farmers around the country recognize that crop varieties grow best in certain regions. Most plant … (Berkeley Lab), has produced a high-quality reference sequence of the complex switchgrass  genome using samples … many parts of the country also helped the team understand why some switchgrass plants from the Northeast have traits …

… capabilities support researchers exploring how to convert sequence into functional assessments. This is done by … design tool  … BOOST provides a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination …

… at JGI start with sequencing, but where else did those sequences go? Like, what are the other scientific tools we … that describe the work. In general. Scientific merit and why it’s important. The DOE mission is one of these … related to human health or creating vaccines, human gut microbiomes. We don’t do things related to human health. In …

… then genomics happened. Dan: Yeah, I did my first genome sequence with you. Brad: That’s right,  Dan: JGI did it in … working with you, Dan, on this one, and we said, “Well, why don’t we have you know, the bioinformaticians go against … Not a big leap, but then we began looking at microbiomes associated with various invertebrate organisms, …

… them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The … processing and analysis pipelines for the interpretation of microbiome omics data Developing forward-looking strategies … distribution of microbial genome and microbiome datasets sequenced at the JGI. IMG/M is also open to scientists …

… stories about natural products, so you can get a feel for why I think they’re so important, and we’ll start to explain … more about some of the background and sort of the reasons why we want to do this. And also to provide a little more … of the fun things that I hope that I can express today is why secondary metabolism is interesting and why it is that …