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Natural Prodcast Episode 7: Ben Shen
… delivery mechanism. So, the polymer structure has specific preferences to cancer cell lines. So, that was introduced in … the paradigm of how to discover natural products. So, why I’m very excited to be working with Dan, you, with the … and other companies could pick up on the leads that are generated from scientific efforts, now. BEN: Precisely! …
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Natural Prodcast Episode 16: Marcy Balunas
… does some really exciting work there. And I thought, well, why don’t we try to go to Alaska and see what we can find … almost never Actinomycetes. And so when we look at their genomes we don’t get the same kind of information that we … of her work on molluscs and their cyanobacterial feeding preferences A 10″ Simple Rules” article on increasing …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… is like, what’s your origin story in natural products? Why are you doing this? JACLYN WINTER: I’ll kind of go back … organisms we’re finding– at least by looking at their full genomes — are really not like anything that’s been … a lot of computation. It’s taken us a long time to actually generate this, and I’m not quite sure how we sustainably …
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Metabolomics Program
… enhance our understanding of genome science, organisms, and ecosystems at the molecular level. Integrating genomics with … and computational tools, the program supports foundational research related to soil nutrient cycling and health, … biogeochemical processes, development of high performance plants and microbes, and understanding microbiome …
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DNA Synthesis Program
… bioenergy solutions.  The program has been a pioneering effort in functional genomics since 2012, with a focus on … sustainable biochemicals. The DNA Synthesis Program aims to generate large datasets to explore sequence-function … analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with … of school . They can't commit 8, 10, 20 hours a week in the research lab, but they can commit to a semester of some …
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Microbiome Data Science Team
… analysis and interpretation is creating new opportunities for breakthrough discoveries and catalyzing a major … 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science … Almeida A, et al. (2020) A unified catalog of 204,938 reference genomes from the human gut microbiome. Nature …
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Natural Prodcast Episode 13: Francisco Barona Goméz
Mexico, and an incredibly bright guy who’s been thinking for a long time about the evolution and natural products … least, talk to us, first about my definitions of things and why I am wrong, and also talk about some of the great … it is more related to what JGI does, which is sequence genomes. And we just published last year in the Nature …
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JGI Portals
… of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to … based on their metagenome sequence, in the context of reference isolate genomes included from the IMG/M system. … … available sequenced algal genomes and genome annotations generated by the JGI and by others. The web portal allows …
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Publication Policy
… and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts to do so, and JGI expects … between all systems to maximize the impact of user research. The crucial elements are  proposal Award DOI(s), …
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Micro-Scale Applications Group
… technology in order to enhance the quality of single-cell genomes and directly link functional information with individual cells. Research Team    … The JGI uniquely offers the first …
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