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SIPs with Standards
… Stable Isotope Probing (SIP) is a powerful technique for studying microbial … show which microbes are handling specific nutrients, or what they're doing with those nutrients, and even how quickly. … catch: SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, … recently, these long-reads have been applied to DNA methylation analysis as well as improving metagenome assemblies. Q&A from the Webinar: Input & … Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed …
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Matthew Kellom
… Matt is broadly interested in the interactions between … environment, and using metagenomics to study these complex natural systems. Microbial communities living in hard-to-reach places that are considered to be inhospitable to humans are of … also supports various CSP and FICUS user projects for the Metagenome Program. …
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Complete genome sequence of Xylanimonas cellulosilytica type strain (XIL07T)
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Publication Policy
… The purpose of this policy is to establish communication norms around JGI contributions, ensure that all contributors to a research project are appropriately … and their corresponding ORCiD and relevant CRediT taxonomy categories. Users: Users are responsible for reviewing the …
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Mission
… JGI Mission As a U.S. Department of Energy Office of Science … advanced genomic capabilities, large-scale AI-ready data and professional expertise to support the global … and resources. Our vision is to lead AI-driven genomic innovation to advance biotechnology.   …
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Natural Prodcast Episode 12: Nadine Ziemert
… to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural products and the … was fascinating, I think. DAN UDWARY: Yeah, and that was a JGI Community Sequencing Project. You’re right, yeah. NADINE … that easily can identify secondary metabolite pathways in metagenomes, which is still hard to do. We are mining a lot …
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User Programs
… be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds.  …   Proposal Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics JGI-TMF Critical Minerals and Materials Status CLOSED CLOSED ONGOING ONGOING CLOSED Who …
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Supercharging SIP in the Fungal Hyphosphere
… and fungi The Science Researchers have successfully automated aspects of a commonly-used process for studying … of Microbiome . High-throughput stable isotope probing (SIP) proved to vastly reduce labor and improve results. … HT-SIP is a capability available to request through  the JGI proposal calls . …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… The  National Ecological Observatory Network (NEON) is a network … Collaborations for User Science” (FICUS) call between the JGI and the  Environmental Molecular Sciences Laboratory … of NEON samples and specimens per year. This NEON-focused webinar complements a  recent webinar co-hosted by the JGI …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  video below, captions are available) spotlighted the … Genome Institute, a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory, is committed … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Natural Prodcast Episode 11: Marnix Medema
… to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural products and the … of question have you applied them? Dan Udwary: Well, at JGI we have the Atlas of Biosynthetic Clusters . And this is … primer episode, we talked about genome mining through some metagenome associated genomes. And yes, antiSMASH is …
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