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… focused on the application of  function-driven single-cell genomics . Here, single cells are characterized and selected as based on a specific functional trait or phenotype of interest, prior to and in … B.P., Tsiamis G., Sievert S.M., Liu W.T., Eisen J.A., Hallam S.J., Kyrpides N.C., Stepanauskas R., Rubin E.M., …

…   Each year, the JGI accepts proposals for state-of-the-art functional genomics research from potential users who need help … genomic information into biological function. Through our CSP Functional Genomics call , we look for projects that …

The JGI Engagement Webinar held November 5, 2020 (watch the  video below, … available through the  Community Science Program (CSP) . This includes mass spectrometry-based measurements of … do all the analyses? A:  For the JGI  New Investigator and  Functional Genomics proposal calls, projects can request up …

… makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also seeks out new … the quality of single-cell genomes and directly link functional information with individual cells. Research Team  … the first quantitative Stable Isotope Probing (SIP) Metagenomics pipeline that utilizes internal analytical …

… metabolism, and natural products, or metabolites, were basically interchangeable terms in terms of common usage. And I … by bacterial or fungal metabolism by microbes, will have a functional role. We started from that. Evolution doesn’t … I think the important thing to remember is that, thanks to genomics, we now know that it is very hard to find stuff …

DAN: Excellent, Yeah. OK, cool. So then what specifically about natural products? What got you in that … it’s really about what are they doing. And so it’s really functional genomics. And there’s a lot of sequencing based approaches, …

… drive critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at improving our collective … … Coclet, C. and Roux, S. (2021) Global overview and major challenges of host prediction methods for uncultivated …

Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We … science that will help solve energy and environmental challenges.  Commissioned for the JGI’s 25th anniversary, the JGI mural references dozens of iconic JGI contributions to advancing the frontiers of environmental and …

Program .   If “BERSS” is not mentioned in the BER funding call, proposals are NOT eligible for BERSS support through … and should generally conform to the guidelines for our  CSP Large Scale call .  Process Proposals may be submitted … set, or the refining of new technology (e.g., single-cell genomics; metagenomics, etc.).   The faculty-level scientist …

… said Susannah Tringe, JGI User Programs Deputy. “These new CSP projects accelerate our efforts to characterize … transformations.” The JGI’s large-scale call included algal genomics as a focus area, and one of the accepted proposals … toward generating “with unprecedented precision” the gene functional networks and regulatory networks of a single …

… a snapshot of microbial diversity and their metabolic functional potential. This research enables us to better … resources that support user analysis of biogeochemically-relevant pathways, enabling modeling of microbiomes … such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and …

… from uncultivated microbes and viruses. We develop computational approaches to sift through thousands of … communities and ecosystem function.  The Environmental Genomics group also hosts the Viral Genomics group . … for stable isotope probing metagenomics . mSystems , e01280-22. 10.1128/msystems.01280-22 Clum, A. et al. (2021)  …