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Products
… The JGI has diverse capabilities in: DNA and RNA sequencing, … is provided for all sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the … for a proposal, we encourage you to contact the relevant JGI  Science Program leads to discuss available options. …
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Publication Policy
… of this policy is to establish communication norms around JGI contributions, ensure that all contributors to a … of the journal in which the research is published. The JGI expects that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce …
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User Programs
… be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds.  … Large Scale CSP New Investigator CSP Functional Genomics JGI-TMF Critical Minerals and Materials Status CLOSED CLOSED … who have not been a PI on any approved proposal with the JGI Investigators interested in translating genomic …
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User Advisory Committees
… the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s (Berkeley … stakeholders. The guiding principles for participating on JGI Advisory Committees are outlined in this Code of Conduct. … The UEC represents the JGI user community and is responsible for providing input …
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Frequently Asked Questions: Project Management
… The majority of JGI projects come from the user community. Find out about JGI’s calls for proposals , and submit your proposal online … (WIP) interface.    For commonly asked questions about JGI’s proposal calls and proposal submission, as well as … The “User” signing the JGI User Agreement will be an authorized representative from …
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Frequently Asked Questions: Proposal Submission
… go to the proposal submission page , login using your JGI account (create one here if you don’t already have an … or longer to obtain with no guarantee of approval.    JGI staff are not eligible to submit proposals, or to be listed as co-PIs or collaborators.   JGI’s standard User Agreement must be signed before work can …
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Micro-Scale Applications Group
… Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge … The JGI uniquely offers the first quantitative Stable Isotope … The JGI provides users access to cutting-edge cell sorting, DNA … To provide additional functional insights into microbial genomes, the JGI now uses laser microdissection to …
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The JGI Data Portal: Improving User Experience
… The human-centered, agile collaboration between the JGI and the information technology company Truss has resulted in the JGI Data Portal , a pilot download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal is … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Natural Prodcast Episode 18: A CSP Primer
… with my co-host Alison Takemura, who’s moved on from JGI to do real journalism, and we wish her all the best. … will be too. But, today, I got the chance to work with my JGI colleague Menaka Wilhelm, who is the host of JGI’s other … the user programs at the JGI, and I’m also the head of the microbial genome program. And I’m a scientist here. And have …
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Single Cell Research Group
… in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated … Woyke T ., Doud D. F. R., Schulz F. The trajectory of microbial single-cell sequencing. Nat Methods 14(11): … genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nat Biotechnol 35(8): 725-731 …
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Microbiome Data Science Team
… A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell . 184(13):3376-3393 Almeida A, et … genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.  Nature Biotechnology … et al. (2016) Microbiome Data Science: Understanding Our Microbial Planet. Trends Microbiol. 24(6):425-7. …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… Doering and Bryce Foster and too many others to name at JGI for the last two years or so. SMC is now released and … the pipe. DAN UDWARY: Yeah. Very cool. OK. Yeah, I would imagine– what? There must be a lot of competition as the lake … are familiar with JGI’s IMG data portal , the Integrated Microbial Genomics, there was a subsection of that called …
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