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Mapping the Earth’s Hidden Fungal Kingdom
… fungi remain largely mysterious. Only about 200,000 fungal species have been named. Among those sequenced, … with the Department of Energy (DOE) Joint Genome Institute (JGI)’s Fungal and Algal Science Program and JGI users have … toward 10,000 annotated genomes, this infrastructure advantage becomes even more critical. With roughly half of all …
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Institutional User Agreements
… must have their home/employing institution sign a JGI Non-Proprietary User Agreement and Appendix. An Appendix … for the signing official. User Institutions with an active JGI User Agreement older than January 2024 will be required … required paperwork to your institution. (Samples of the JGI User Agreement , JGI User Agreement for Federal Agencies …
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Natural Prodcast Episode 4: Nancy Keller
… episode is our conversation with Nancy Keller, a fantastic fungal natural products researcher from the University of … actually, everything is funding, right, isn’t it? I thank JGI for sequencing a lot of fungi. But the thing with them – … I know it’s early on, but you do have a project with the JGI. It’s doing some some fungal genome sequencing, I …
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Natural Prodcast Episode 23: Aaron Puri
… natural products chemistry, and he has a project with the JGI to synthesize the genes for and explore the chemistry of … bound to it and maybe there will be some a affinity tag or a fluorescent tag, and so you can use that as a readout of activity. And I …
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User Programs
… be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds.  … Large Scale CSP New Investigator CSP Functional Genomics JGI-TMF Critical Minerals and Materials Status CLOSED CLOSED … who have not been a PI on any approved proposal with the JGI Investigators interested in translating genomic …
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JGI Workshops at 33rd Fungal Genetics Conference
… Wednesday, March 18: "Genomics of Environmental Opportunism: Fungal Adaptation at the Edge of Pathogenicity" Workshop Steven Ahrendt presenting  Friday, March 20: JGI-EMSL Workshop: "Toward 10,000 Fungal Genomes and Phenotypes" …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … mapping these RNA reads. “Currently, this is the largest JGI-sequenced fungal metatranscriptome yet,” said Igor …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … in Mycology . This work was enabled in part through  JGI’s  Community Science Program (CSP) , as several approved …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… you guys. I’m trying really hard just for you. And the JGI Comms team. But mostly you. Anyway…I’m really happy … allow that to bind. Your receptor also typically has some tag so that you can then pull down the receptor with that … students, we obviously can't put any antibiotics or antifungals in there. So they get just a smattering. JACKIE: …
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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI plays a leadership role in providing genome science … drive innovations that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, and DNA …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, 24 large-scale … investigator on any proposals previously accepted through JGI’s calls. Nearly 200 Terabases of data are expected to be … focus area was inter-organismal interactions, and two fungal proposals focus on symbiotic relationships. Jessie …
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Frequently Asked Questions: Proposal Submission
… go to the proposal submission page , login using your JGI account (create one here if you don’t already have an … applicants from any institution type and at any career stage. Generally, most users are able to work with Berkeley … or longer to obtain with no guarantee of approval.    JGI staff are not eligible to submit proposals, or to be …
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