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Camargo and Simon Roux, a few of the JGI researchers behind software that finds plasmids and viruses within microbial …

… and plants. Working with a talented team of scientists and software engineers, Dr. Goodstein currently leads the Plant …

In the last two episodes, we’ve covered the specialized software and supercomputers behind this project. But every …

… that giant assembly from Lake Mendota. In this episode: the software evolution that made metagenome assemblies like this …

… micro-organisms within complex communities, and custom software for integrating metabolomics with genomic data …

They can be found in virtually all of Earth’s ecosystems. A software tool  recently described in  Nature Biotechnology  … upon their gene content and their genetic sequences. The software was created by researchers under the direction of …

… and Roux also worked together on the development of a new software tool called geNomad that identifies and classifies …

… as an R package … Education … Selected Publications … Software …

… such as  Mash and  BBsketch , whose lead developer is JGI software developer Brian Bushnell, no alignment-free tool …

The metagenomes were also processed using the JGI-developed software suite, BBTools , and relying on the JGI Integrated …

… this team built a phylogenetic tree using bioinformatic software called FastTree and identified 62 distinct AT …

I wasn’t familiar with in terms of machine learning and new software I’d never been using before. I also wanted to …