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Natural Prodcast Episode 5: Brad Moore
Natural Products conference, which took place last January 2020 in San Diego. San Diego, of course, is the “home turf” of … them that it looked to be of a certain number of modules in size, they then quickly were able to then solve the …
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Natural Prodcast Episode 15: Katherine Duncan
… inside them. And this was, I think it must’ve been about 2001, maybe, and so it was before smartphones and before … I’m going to learn microbiology. So I went to– this was in 2008 by then. And I’ve never done– I mean, I think I did … in the terms biosynthetic gene clusters and genome size. And they’re so complex. There’s so much still to …
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JGI-KBase Panel at SACNAS
Nov. 2: Getting Credit for Scientific Contributions of Any Size …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… type of food that was in the contaminated aquifer in 2007 to achieve this goal. In less than four years, parts of … of the groundwater were nearly cleared of contamination. By 2020, the water was at contamination levels that are below the …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… (Berkeley Lab) took on the Open Green Genome Initiative in 2018 as part of its Community Science Program. The OGG has … with numerous chromosomes. For a long time, this immense size and chromosomal hoarding had been thought to be the … of documented WGDs in ferns could not explain the massive size of most fern genomes. A team of researchers put …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… of this is based on a really great paper that came out in 2020 where this is all explained in detail, so if you’d like a … are microbes that will actually redefine how you synthesize nucleotides. Stuff that are at the core of what we call …
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Natural Prodcast Episode 20: Brian Bachmann
… went on to work at a groundbreaking company in the early 2000s called Ecopia, which was a very early genome mining … today, recording today. BRIAN BACHMANN: Yeah, in the year 2000. And I was trying to figure out what to do with myself … 20 analogs at this point. And Casey and Nikolaou synthesized the everninomicin at Scripps, I guess, 22 years ago. …
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An Integrated Dataset to Understand Ecosystem Interaction
… processes for the first time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as well … that contribute to a sustainable bioeconomy. Summary The 27 samples studied by researchers came from two … within the trees. The data set generated is 25 terabytes in size. Resources for genomic sequencing, analysis and …
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IMG Group
… (Alignment fraction, AF) have been computed for nearly 28,000 bacterial and archaeal genomes. By clustering genomes … made it possible to confidently assign species to nearly 326 genomes. Through the analysis of cliques, it has also …
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Natural Prodcast Episode 12: Nadine Ziemert
… secondary metabolism. Welcome back. This will be episode 12 of Natural Prodcast. And it’s our conversation with Nadine … And I think you’ll enjoy it. So here it is, episode 12 with Nadine Ziemert. DAN UDWARY: Hey, Alison. ALISON … ALISON TAKEMURA: And this is Paul Jensen in the early 2000s? Late 2000s? NADINE ZIEMERT: No, yeah, 2010. ALISON …
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Expanding Virophage Diversity
… virophage marker gene MCP, they were able to identify 44,221 total virophage partial sequences, including over 28,000 … their discovery has extended the possible virophage genome size range from 13.8-29.3 kilobases (Kb) to 10.9-42.3 Kb. …
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How to Submit Sequencing Samples
Weight DNA extraction and quality control (from PacBio) 2) Review guidelines detailing quantity and quality … must also include a completed Export Certification Form . 2) Obtain Approval for Shipping Before approval to ship is … accept any materials classified above NIH Biosafety Level 2. 3) Review Shipping Instructions After receiving shipping …
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