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Who We Are
… of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley National Laboratory. The JGI consists … high-throughput AI-centric genomic science user facility located at Lawrence Berkeley National Laboratory ( Berkeley Lab …
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Natural Prodcast Episode 9: Roger Linington
… this is just the natural products community listening to itself talk, or if we’re finding an audience outside of just … to ensure equitable benefit sharing if any discoveries were made that were of value to the host country. And it had a … could then show that to collaborators and say, “This is a prototype. If you will help, we could do this in a more …
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Natural Prodcast Episode 15: Katherine Duncan
… Hey, Dan. Dan Udwary: Today we’re going to talk to Kate Duncan. And Kate is– I should ask, you are Kate Duncan? … networking, because I really enjoyed the review that you wrote with Marnix on putting that stuff together. It’s been … which caused no end of confusion. And we actually made up a quarter of the master’s class, because there were …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… The Joint Genome Institute and the Molecular Foundry have launched a joint Critical Minerals and Materials proposal call . This represents a unique … to request the capabilities and expertise of both national user facilities in one research proposal.  Submit … Access to the Molecular Foundry and use of JGI capabilities is free. The JGI supports …
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Fungus Fuels Tree Growth
… poplar, a potential biofuel feedstock.     The Science The fungus  Mortierella elongata enjoys a dual lifestyle; it can … caused poplar cuttings to grow about 30 percent larger by dry weight than without PM193  . By contrast, using a … that directly influence plant phenotype, such as secreted proteins. However,  M. elongata  seems to encourage the plant …
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Building Wet and Dry Lab Skills
… grant.  Building off the previous year’s project, undergraduate interns Tamyra Long and Zyiah Mikes worked with mentors … biome of. Tamyra Long : The other side is what we call the dry lab. We've been focused on analyzing plant microbiome … the people at JGI. Everybody was so welcoming. Everybody made me feel comfortable here. Zyiah Mikes : You guys are …
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Making a Lichen Together
… first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership more … Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) participants. One … now getting more scrutiny is how lichen is able to survive drying out to a potato-chip level of crispiness, only to …
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Partnerships: Adopt-A-Genome
… the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome … A primary purpose of this project is to bring educators from a broad range of disciplines up-to-speed with …
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Frequently Asked Questions: Project Management
… for more details, including a downloadable pdf of products categorized by Science Program.  … , and submit your proposal online using the Work Initiation Process (WIP) interface.    For commonly asked … the JGI User Agreement will be an authorized representative from your institution (usually a legal counsel …
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An Addiction Crucial to a Fungus’ Reproduction
… A fungus relies on bacteria to regulate key components of its reproductive machinery The Science … have evolved from a parasitic interaction with their soil fungus host, Rhizopus microsporus . Researchers found that … This research was supported by the National Science Foundation and the National Institutes of …
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When “The Blob” Made It Hotter Under the Water
… Data from marine heatwave event may foreshadow climate change impact on marine microbial communities. The … A team of researchers tracked the impact of a large-scale heatwave event in the ocean known as “The Blob.” The event was … 05CH11231, the G. Unger Vetlesen and Ambrose Monell Foundations, the Natural Sciences and Engineering Research …
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How to Submit Sequencing Samples
… on accessing sample-level reports and tracking statuses.  Please follow the steps outlined below. Click the … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting step for many projects at the JGI. The quality …
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