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Phage–bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome
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Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection
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Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome
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IMG Group
… components of JGI’s production workflow, and is responsible for the annotation and analysis of (meta)genomic, … them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The … state-of-the-art data processing and analysis pipelines for the interpretation of microbiome omics data Developing …
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Natural Prodcast Episode 4: Nancy Keller
… to Natural Prodcast! This is episode 4! From here on out, for a while, we’re going to be presenting some conversations … the feed, the secondary metabolism field has been dominated for … well, as long as I can remember, by bacterial … they deserve. They are so exciting. I get frustrated. Like microbiomes  – you know how that’s a big deal now. You go to …
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Data Policy
Data Policy. It is our mission to support open data and information sharing. We also recognize the need to have a … research data and analysis products (referred to as “data” for the remainder of this policy) produced through all user … Program (CSP), Facilities Integrating Collaborations for User Science (FICUS) initiative, Director’s Science …
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Partners
… has a long-term partnership with the HudsonAlpha Institute for Biotechnology for our Plant Program, and is further leveraging the … DOE Systems Biology Knowledgebase (KBase) and the National Microbiome Data Collaborative (NMDC)—to provide access to …
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Natural Prodcast Episode 11: Marnix Medema
… genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM … similarity to a gene cluster with a known compound from the reference database: It must be identical. It must be that … we, for example, are really interested in metagenomes and microbiomes and figuring out which gene clusters are …
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Plant Program
… to environmental changes. The program lays the groundwork for sustainable solutions to current problems facing … the Plant Program is advancing research into plant-microbiome interactions, focusing on how environmental … The  Plant Gene Atlas initiative develops gene expression catalogs across JGI Plant Flagship speciesspecies, using …
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Natural Prodcast Episode 7: Ben Shen
… of secondary metabolism.  DAN: Hello, and welcome back for Episode 7 of the Natural Prodcast. It’s been about a … and synthetic biology. But also the metagenomics and gut microbiome, as I think that it’s like a perfect storm in … delivery mechanism. So, the polymer structure has specific preferences to cancer cell lines. So, that was introduced in …
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A catalog of the diversity and ubiquity of bacterial microcompartments
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A Complex Confection Decoded: Sugarcane Reference Genome
Sugarcane was the last major crop without a reference quality genome and now crop researchers can work … world’s most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the sugarcane cultivar R570 has been  …
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