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FICUS
The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique opportunity for researchers to request the capabilities and expertise of … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …
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Natural Prodcast Episode 7: Ben Shen
… of secondary metabolism.  DAN: Hello, and welcome back for Episode 7 of the Natural Prodcast. It’s been about a … and enabling technology, but interesting biology and a potential application of translation in medicine. So it’s a … you to, say, go to your grandma’s backyard. To collect the diversity that exists in the 1940s? The answer is no! If …
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Environmental Genomics Group
… approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop … Our aim is to more fully capture microbial and viral diversity, leading to a better understanding of microbial … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …
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Microbiome Data Science Team
… analysis and interpretation is creating new opportunities for breakthrough discoveries and catalyzing a major … research.  These efforts include exploration of the global diversity of alternative genetic codes (Science 2014), … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …
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User Support
… work and outline roles and responsibilities resulting in a formal Statement of Work (SOW). All work performed at the JGI is initiated via the Work Initiation … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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IMG Group
IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the annotation and analysis of (meta)genomic, … state-of-the-art data processing and analysis pipelines for the interpretation of microbiome omics data Developing …
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Natural Prodcast Episode 24: Jackie Winter and SMC
Doering and Bryce Foster and too many others to name at JGI for the last two years or so. SMC is now released and ready … the University of Utah– is looking at the natural product potential of microorganisms from Great Salt Lake, which is a … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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Natural Prodcast Episode 12: Nadine Ziemert
… that example, was it the case where that colleague saw a potential mechanism for why there would be this … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … see. So it doesn’t seem to be a correlation between biodiversity in taxa and biodiversity in secondary metabolites. …
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Natural Prodcast Episode 11: Marnix Medema
… genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM … you to get a bird’s-eye perspective on the biosynthetic diversity element of these genomes. And you see how they’re– … ones? And which groups or families of gene clusters are potentially novel. So it might yield novel pathways of …
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Natural Prodcast Episode 14: Nigel Mouncey
… products work, right? Think about how many things that are potential drug molecules that have micromolar activities. … A few examples of those are obviously expanding the diversity of known secondary metabolites and their … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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Natural Prodcast Episode 4: Nancy Keller
… to Natural Prodcast! This is episode 4! From here on out, for a while, we’re going to be presenting some conversations … that’s of the sort that people are looking for, for biofuel production. We’ll see how that goes.    ALISON: Is this the …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… and scientists of secondary metabolism. Welcome back for our second season of Natural Prodcast. This first … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … Yeah, bacteria sound like a good place, to me, to look for diversity because there are so many bacteria, because it is …
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