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Environmental Genomics Group
Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …
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Natural Prodcast Episode 11: Marnix Medema
… … Dan Udwary: You’re listening to the Department of Energy … center and a lot of the really important recent events in data analysis and secondary metabolism over the last decade … different types of data, including expression data, use of metatranscriptomics, where you measure gene expression …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … now, just because of the ways that we can generate data. So, obviously, it’s very apparent to us here at the … or MAGs. So these are genomes that were assembled from metagenomic sequence, metagenomic sequence being taking a …
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Project Management Office
The JGI Project Management Office carries out a number of activities to … of samples for sequencing, or the submission of sequencing data for synthesis – the DOE requires that all work … Natasha Brown Supply Chain Manager Tijana Glavina del Rio Metagenomics         Danielle Graham Microbial Program Nancy …
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CSP Functional Genomics
The CSP Functional Genomics call is to enable users to perform … the JGI at any time using a simple web-based form and are reviewed annually. For accepted proposals, sequencing, … for scientific merit, DOE mission relevance , proposed data usage by the applicant/community, and track record of …
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User Programs
For accepted proposals, sequencing, synthesis, metabolomics and analysis will … Spring 2026 for the FY27 call Sept. 9, 2025 Jan. 29, 2026 Review Date June 2025 August 2025 November 2025 March 2026 … …
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Natural Prodcast Episode 15: Katherine Duncan
… … Dan Udwary: Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today … the idea of taking all the different natural products data that there is and putting things, coalescing them, so … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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Natural Prodcast Episode 5: Brad Moore
… … DAN: You’re listening to the US Department of Energy Joint … Patrick would spend time between our two laboratories doing metagenomics, some genomics. We were a little concerned … before you see toxin. And we have some preliminary data with other samples that we do see days to a week of a …
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Institutional User Agreements
Every approved proposal starts with a User Agreement — before any … of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required by the DOE for … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Frequently Asked Questions: Project Management
Eukaryotic projects: Kerrie Barry or Vivian Ng Prokaryotic … then be used to submit proposals, sample and project metadata, and to access JGI tools and systems. … Go to the “ … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … …
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FICUS-NERSC/KBASE
Joint Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve … of Science through high performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( … more customized analysis, the JGI also participates in publication of results. … Submission … More on Sequencing …
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Metabolomics Program
The JGI’s Metabolomics Program works to uncover the roles of small … molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, … Environmental molecular network:   ENVnet   is a comprehensive, mass spectrometry-based molecular network of …
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