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Microbiome Data Science Team
… Molecular Cell 2019) and massive reconstruction of genomes from uncultivated microbes (Nature 2019). Other projects in … S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . 6(7):960-970. … Selected Publications …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… and shipping; JGI will handle all subsequent processing from that point. JGI provides users with various outputs … For DNA synthesis projects, JGI ships physical materials like expression constructs or sgRNA libraries to the user. … publicly available. If you're requesting DNA synthesis from JGI, there's also a material transfer agreement that’s …
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Natural Prodcast Episode 17: Cassandra Quave
… The guest we have this week is Professor Cassandra Quave from Emory University, with joint appointments in the School … of academia, or if you want to understand what it’s like to do field science as a woman and with a physical … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …
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Natural Prodcast Episode 18: A CSP Primer
… interview with my co-host Alison Takemura, who’s moved on from JGI to do real journalism, and we wish her all the … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we … They’re not as involved, I would say. And each call gets updated constantly. In fact, we’re just rewriting the …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find … for genetic elements of interest, you know, something like treasure. DAN UDWARY: There you go. ALISON TAKEMURA: It … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, …
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Natural Prodcast Episode 7: Ben Shen
… This time, we’ve got a great interview with Ben Shen, from the Scripps Research Institute in Jupiter Florida. This … don’t really have any trouble understanding him, but I know from the download stats that we actually have a lot of … the metagenomics and gut microbiome, as I think that it’s like a perfect storm in terms of fundamental knowledge and …
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DOE Metrics
… [Download PDF]   FY 2014 Overall Sequencing Progress, Updated Quarterly Quarter Total Bases (Billions) Operating … available hours.   FY 2013 Overall Sequencing Progress, Updated Quarterly Quarter Total Bases (Billions) Operating … Hours reflect a delay in implementation of the LIMS from Q2 to Q3. As a result of the delay in the LIMS …
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Natural Prodcast Episode 20: Brian Bachmann
… our interview this week is with Professor Brian Bachmann from Vanderbilt University’s Chemistry Department, where he … friends and colleagues, having both graduated with our PhDs from Craig Townsend’s lab at Johns Hopkins. Brian went on to … consortia of microorganisms growing on the walls. They look like– they look like colonies, different colors, all sorts …
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Natural Prodcast Episode 5: Brad Moore
… about natural products you’ll get a good sense of what it’s like working with him.  We talk about his father, the … the University of Hawaii and moved there in the early ’60s from Berkeley to work on this new budding field of marine … that are coming out of organisms, whether it be a plant or from the bottom of the ocean, from a sponge, or a seaweed, …
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Natural Prodcast Episode 22: Alison Narayan
… we have our conversation with Professor Alison Narayan, from the University of Michigan. I hope she’ll accept this … to introduce our guest today, professor Alison Narayan from the University of Michigan. Dr. Narayan is currently … can I make that big, beautiful molecule? And so I’d like to think I’ve evolved a bit since that time. And I …
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JGI Portals
… for amplifying the JGI’s impact. Data generated from a single investment will be reused for further … analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated … in the context of reference isolate genomes included from the IMG/M system. …
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Natural Prodcast Episode 6: Marc Chevrette
… in the project by watching Amanda Hurley’s presentation from the 2019 JGI Genomics of Energy & Environment Meeting.] … research, and I hope to be able to share a few more stories from there as we go forward. And Marc’s quickly built up a … having me. DAN: We know each other pretty well. So I feel like it’s always fun to talk to you. I’m particularly …
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