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Natural Prodcast Episode 9: Roger Linington
… … DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I … going to understand the chemical diversity and chemical utility that nature has to offer us. I found this … and curate the information and make sure that what the algorithm had done was actually accurate. And so we told …
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Frequently Asked Questions: Project Management
… can visit the Products & Offerings section of our website for more details, including a downloadable pdf of products … can also generate various reports. Access the reports by searching for projects in the portal search page and then … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … …
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User Support
… work and outline roles and responsibilities resulting in a formal Statement of Work (SOW). All work performed at the JGI is initiated via the Work Initiation … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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Microbiome Data Science Team
… analysis and interpretation is creating new opportunities for breakthrough discoveries and catalyzing a major … Science  356: 82-85 Ovchinnikov S. et al. (2017) Protein structure determination using metagenome sequence … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …
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Natural Prodcast Episode 16: Marcy Balunas
… and the bacteria and how the chemistry is going back and forth between them is part of what fascinates me about what … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … easy to search for because there are patterns of domains, protein domains that you look for. And if you find those all …
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Natural Prodcast Episode 18: A CSP Primer
It’s been a while, but Natural Prodcast is back again for another round of episodes. If you stick around for the … sets that don’t just benefit that one PI, but that have utility more broadly across a group of scientists, across … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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Doubling Down on Known Protein Families
… to better understand microbial communities by looking at protein function within them. The work was led by a team of … unique makeup of microbe players and the functions they perform, artificially replicating a whole community is … Division,” Pavlopoulos said. “They developed parallel algorithms to perform ‘all-vs-all’ comparisons and graph …
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How to Submit Sequencing Samples
… of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … quantity and quality has been the rate-limiting step for many projects at the JGI. The quality of the starting … by accessing various reports on the JGI Portal . Use the search feature to bring up a list of projects that you are …
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FICUS Overview
The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 to encourage and enable researchers to more easily integrate the expertise and … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …
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Natural Prodcast Episode 2: The Primer, Part 2
… so secondary metabolism is throughout nature, except maybe for animals and humans, not as much. You know, we have this … metabolites, like sponges were a really common source for people to try to find new medicines for a long time. But … lives with them that produces those. So it’s not a hard and fast rule, but, generally, animals do not have secondary …
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Natural Prodcast Episode 17: Cassandra Quave
… … Dan Udwary: Hey everybody! Welcome back for Natural Prodcast episode 17. The guest we have this week … been able to not only purchase their own HPLC to enable faster analysis of their plant extracts, but also establish … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …
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Natural Prodcast Episode 5: Brad Moore
… and SIO. Oh, I should say what those are. Brad: What’s SIO, for all those listeners out there? Dan: Scripps Institution … being developed from that would be having industrial utility as well. Alison: Can you say more about that, like … to make a therapeutic drug, so… A chemical that has no similarity in nature, but retooling enzymes to do that. That …
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