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Natural Prodcast Episode 10: A Primer on Genome Mining
ALISON TAKEMURA: I know that it’s looking in the genome for genetic elements of interest, you know, something like … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … there were certain patterns of amino acids in the active site of the protein that would lead you to basically putting …
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Natural Prodcast Episode 14: Nigel Mouncey
… show notes, which you can always find through the JGI website at  naturalprodcast.com . Finally, I’ll just mention … my undergraduate in microbiology and then PhD in microbial genetics in the UK. And came across to the US for a couple … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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Natural Prodcast Episode 17: Cassandra Quave
… bioprospecting vs biopiracy, early stage drug discovery in general, and a possible data-driven future for plant natural … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as … the US, Canada, and UK. And we’ve already got a couple of translation deals happening in Asia. And I’m hoping we’ll …
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Data Policy
… of certain types of data to support their use by those generating data. The JGI Data Policy applies to research … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … for unrestricted data availability agreed to at proposal initiation. Data from projects that received samples before …
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Natural Prodcast Episode 7: Ben Shen
… technology to help access complicated natural product gene clusters, and we’re all really excited about that, and … but interesting biology and a potential application of translation in medicine. So it’s a really great time to … a specific cell type. So by using the antibody as the recognition motif, coupled with the enediynes, the disease …
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Natural Prodcast Episode 18: A CSP Primer
I think for Natural Prodcast, I think the question that generally comes up that people come to me asking like is– … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we … and you’ve been notified, we work with you to set up an initiation call. During the initiation call, you’re going to …
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Microbial Program
… energy and ecosystem management. The program aims to generate high-quality genomic datasets, particularly for … single cell approaches. This includes linking strain-level genetic variation to ecological niche adaptations.  Single … and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from diverse bacterial and …
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DNA Synthesis Program
Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire chromosomes, … the program enables the design and synthesis of complex genetic pathways and biosystems. It The program fosters … in advancing functional genomics, focusing on developing genetic systems that can address global energy and …
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Products
… percentile*) DNA Synthesis Constructs <5kb in size Single gene or multiple small genes assembled to less than 5kb in … Metagenome Stable Isotope Probing (SIP) Used for the identification of active groups of organisms within a … genome-wide identification of transcription factor binding sites. TF binding sites and motifs Depends on project … * …
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Natural Prodcast Episode 12: Nadine Ziemert
… of it. So it wasn’t only chemistry or only biochemistry or genetics. It was also ecology. It was also evolution. It was … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … existing technology. And a lot of that was around chemical identification technology, mass spec, NMR. And we talked a …
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New Lineages of Life Group
… and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C … et al. (2017) Giant viruses with an expanded complement of translation system components. Science, 356 (6333), 82-85 … nucleus of amoebae. The ISME Journal. 8 (8), 1634-1644 … Publications … For further details, please reach out to the …
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Metabolomics
… environment that influence system behavior.  Through this identification, metabolomics enables functional genome … products At JGI, in-depth molecular profiles are generated for metabolites extracted from a variety of …
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